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Table 4 The estimated digenic (gametic and composite), trigenic and quadrigenic disequilibria averaged over all syntenic SNP pairs on 29 autosomes in the Kinsella composite beef population

From: Genome-wide analysis of zygotic linkage disequilibrium and its components in crossbred cattle

BTA

φ D AB 2 a

φ Δ AB 2 a

φ D ABB 2 a

φ D ABB 2 a

φ Δ ABAB 2 a

1

0.0082

0.0077

0.0035

0.0033

0.0012

2

0.0088

0.0082

0.0036

0.0036

0.0012

3

0.0093

0.0085

0.0030

0.0032

0.0013

4

0.0099

0.0091

0.0034

0.0032

0.0013

5

0.0096

0.0089

0.0037

0.0037

0.0013

6

0.0095

0.0086

0.0031

0.0032

0.0013

7

0.0098

0.0089

0.0031

0.0032

0.0013

8

0.0098

0.0090

0.0033

0.0033

0.0013

9

0.0092

0.0085

0.0036

0.0036

0.0012

10

0.0101

0.0094

0.0034

0.0031

0.0013

11

0.0098

0.0090

0.0036

0.0039

0.0013

12

0.0099

0.0091

0.0036

0.0034

0.0013

13

0.0109

0.0099

0.0034

0.0032

0.0014

14

0.0111

0.0101

0.0031

0.0035

0.0014

15

0.0103

0.0096

0.0033

0.0038

0.0013

16

0.0103

0.0095

0.0041

0.0040

0.0013

17

0.0103

0.0096

0.0032

0.0031

0.0013

18

0.0111

0.0103

0.0039

0.0034

0.0014

19

0.0108

0.0100

0.0034

0.0032

0.0014

20

0.0108

0.0100

0.0037

0.0037

0.0013

21

0.0103

0.0095

0.0035

0.0030

0.0013

22

0.0113

0.0104

0.0028

0.0032

0.0014

23

0.0111

0.0102

0.0045

0.0036

0.0014

24

0.0123

0.0112

0.0039

0.0041

0.0014

25

0.0126

0.0117

0.0044

0.0037

0.0016

26

0.0118

0.0111

0.0032

0.0031

0.0014

27

0.0124

0.0114

0.0035

0.0035

0.0014

28

0.0113

0.0104

0.0033

0.0036

0.0014

29

0.0115

0.0106

0.0041

0.0035

0.0014

Ave.

0.0105

0.0097

0.0035

0.0034

0.0013

  1. a The generalized measures of squared correlation for digenic, trigenic and quadrigenic disequilibria:
  2. φ D AB 2 = X D AB 2 / n , φ Δ AB 2 = X Δ AB 2 / n , φ D ABB 2 = X D ABB 2 / n , φ D AAB 2 = X D AAB 2 = X D AAB 2 / n , a n d φ Δ AABB 2 = X Δ AABB 2 / n , where n is the number of animals at individual SNP pairs.