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Table 2 Novel SNPS in the promoter region, and * I199V non synonymous SNP (previously published), including positions relative to transcription start site, base pair change and minor allele frequency in 3 crossbred pig populations: Large White, Duroc and Pietrain-sired F1 female offspring with a common Large White x Landrace background

From: SNP variation in the promoter of the PRKAG3gene and association with meat quality traits in pig

SNP 1>2

NCBI SNP submission #

SNP position relative to TSS

Allele frequency

   

Large white X

Duroc X

Pietrain X

   

n = 30

n = 23

n = 32

g.-995A>G

472333124

−995

0.45 (G)

0.28 (G)

0.23 (G)

g.-968G>A

472333125

−968

0.48 (A)

0.28 (A)

0.23 (A)

g.-671A>G

472333126

−671

0.48 (G)

0.28 (G)

0.23 (G)

g.-583C>T

472333127

−583

0.48 (T)

0.28 (T)

0.23 (T)

g.-480C>T

472333128

−480

0.05 (T)

0.05 (T)

0.00 (T)

g.-461C>T

472333129

−461

0.00 (T)

0.17 (T)

0.00 (T)

g.-311A>G

472333130

−311

0.36 (G)

0.07 (G)

0.11 (G)

g.-221G>A

472333131

−221

0.37 (A)

0.07 (A)

0.11 (A)

g.-158C>G

472333132

−158

0.42 (C)

0.30 (G)

0.27 (G)

g.-58A>G

472333133

−58

0.43 (A)

0.30 (G)

0.27 (G)

I199V

 

2774

0.34

0.17

0.42