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Table 3 Timing results

From: Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data

   

Number of pools

  
  

50

75

100

150

3-loci Dataset

     
 

TDSPool

0.4458

0.4331

0.4743

0.4861

  

0.4260

0.4772

0.5346

0.5350

 

HaploPool

0.0697

0.0642

0.0607

0.0674

  

0.0593

0.0681

0.0607

0.0691

 

HIPPO

2.3593

3.0793

3.8856

5.3911

  

2.4182

3.2047

4.1161

5.5873

10-loci Dataset

     
 

TDSPool

0.8094

0.7778

1.0367

1.1259

  

1.0269

1.0805

1.1804

1.3920

 

HaploPool

0.5136

0.7381

0.9554

1.4012

  

0.8531

1.2331

1.6247

2.4078

 

HIPPO

59.5605

62.7163

64.1563

71.0505

  

58.8816

64.6515

64.5386

73.9019

HapMap

     

Dataset

TDSPool

1.0189

1.1660

1.1765

1.5455

  

1.8760

2.0830

2.1848

3.2719

 

HaploPool

0.6737

0.9577

1.2679

1.8489

  

1.1636

1.6928

2.2006

3.2905

  1. For each dataset in each algorithm the first line corresponds to the case that each pool has 2 individuals whereas the second line to the case that each pool has three individuals. Time is given in seconds.