QTL affecting stress response to crowding in a rainbow trout broodstock population

BMC Genomic Data

Table 4 Genome scan linkage mapping information per chromosome

Chromosome (Omy)	Number of markers	Length (cM)	Average marker density	Marker information content¹				HS²		VC³		LDLA⁴
				Dam families		Sire families		HS²		VC³		LDLA⁴
				Mean	SD	Mean	SD	EBV	BLUP3	EBV	BLUP3	EBV	BLUP3
1	14	63.2	4.5	0.79	0.06	0.88	0.10
2	13	100.2	7.7	0.71	0.10	0.80	0.17
3	12	112.3	9.4	0.74	0.13	0.80	0.09					**	*
4	13	111.1	8.5	0.71	0.15	0.75	0.16					**
5	13	101.5	7.8	0.77	0.11	0.80	0.15					**	**
6	17	92.0	5.4	0.82	0.07	0.87	0.13		*			**
7	19	133.1	7.0	0.78	0.17	0.78	0.18					**
8	18	103.0	5.7	0.84	0.10	0.80	0.09					**
9	17	104.0	6.1	0.74	0.11	0.88	0.09					**
10	20	117.5	5.9	0.79	0.15	0.88	0.12	*				**
11	13	85.2	6.6	0.74	0.07	0.75	0.10					**
12	16	78.7	4.9	0.76	0.09	0.91	0.06	*		*		**
13	9	65.8	7.3	0.69	0.05	0.94	0.04					**	*
14	18	103.9	5.8	0.74	0.17	0.82	0.17	*				*
15	12	61.2	5.1	0.80	0.08	0.81	0.10
16	13	72.0	5.5	0.81	0.08	0.95	0.03		**		**	**	**
17	19	110.3	5.8	0.86	0.06	0.91	0.09					**
18	10	108.5	10.9	0.65	0.13	0.60	0.11					*
19	13	115.7	8.9	0.68	0.08	0.74	0.09	*	*			**
20	8	42.8	5.4	0.81	0.07	0.87	0.04
21	14	72.4	5.2	0.82	0.08	0.92	0.09					*
22	8	62.7	7.8	0.76	0.07	0.74	0.08	*
23	6	28.7	4.8	0.86	0.07	0.88	0.06
24	8	37.4	4.7	0.82	0.08	0.84	0.03
25	19	105.1	5.5	0.80	0.09	0.84	0.11					**
26	9	65.4	7.3	0.70	0.10	0.74	0.17					**
27	11	58.1	5.3	0.88	0.05	0.77	0.17					**
28	9	53.0	5.9	0.83	0.09	0.79	0.09					**
Sex	9	60.9	6.8	0.75	0.05	0.88	0.12	*		*		**	*
Total/average	380	2425.7	6.4	0.77		0.83		6/0 ⁵	2/1	2/0	0/1	3/19	3/2

¹Marker information content combines the multilocus probability of individuals inheriting allele 1 or 2 from the common parent with marker segregation distortion[35].
^2-4The HS, VC, and LDLA columns show chromosomes containing suggestive (*) and significant (**) QTL for each trait (EBV, BLUP3) identified by half-sib regression interval mapping, variance component analysis, or linkage disequilibrium and linkage analysis, respectively.
⁵The number of total QTL is reported in the last row in the format suggestive/significant QTL.

ISSN: 2730-6844