Table 2 Marker characteristics for the 29 simple sequence repeat (SSR) markers used in this study
Total number of | ||||||||
|---|---|---|---|---|---|---|---|---|
Marker name | Size range | Repeat | Alleles | Rare alleles | Alleles per region | |||
rmu | motif | PIC | < 5% | CH | NO | BG | ||
1A01C20 | 115-141 | 2 | 0.61 | 13 | 11 | 13 | 12 | 13 |
1A01I13 | 146-168 | 2 | 0.78 | 12 | 9 | 10 | 9 | 12 |
2Dg_Contig66 | 161-203 | 3 | 0.76 | 14 | 10 | 12 | 10 | 11 |
2BG04056B2F02_r1 | 83-140 | 3 | 0.79 | 20 | 17 | 17 | 17 | 19 |
2Dg_Contig330 | 166-184 | 3 | 0.71 | 7 | 4 | 7 | 7 | 6 |
2BG04059A1A07_f1 | 73-136 | 3 | 0.88 | 23 | 19 | 21 | 21 | 20 |
2Dg_Contig3046 | 208-226 | 3 | 0.73 | 7 | 4 | 7 | 7 | 7 |
2Dg_Contig5978 | 219-234 | 3 | 0.69 | 6 | 3 | 6 | 6 | 6 |
2Dg_Contig4556 | 189-225 | 3 | 0.77 | 13 | 9 | 12 | 13 | 12 |
2Dg_Contig10135 | 209-224 | 3 | 0.72 | 6 | 3 | 6 | 6 | 6 |
2Dg_Contig660 | 95-119 | 3 | 0.58 | 9 | 6 | 9 | 8 | 9 |
2BG04030A2C10.f1 | 156-192 | 3 | 0.72 | 12 | 9 | 12 | 12 | 12 |
2Dg_Contig10764 | 81-99 | 3 | 0.54 | 7 | 5 | 5 | 6 | 7 |
2Dg_Contig4296 | 184-214 | 3 | 0.78 | 11 | 7 | 11 | 11 | 9 |
2Dg_Contig4110 | 179-197 | 3 | 0.61 | 7 | 4 | 6 | 7 | 7 |
2Dg_Contig6373 | 174-195 | 3 | 0.67 | 8 | 5 | 7 | 6 | 8 |
2BG04046A2B07.f1 | 209-242 | 3 | 0.83 | 12 | 9 | 12 | 12 | 12 |
2Dg_Contig12453 | 90-110 | 2 | 0.81 | 11 | 6 | 11 | 10 | 10 |
2Dg_Contig10487 | 160-178 | 3 | 0.76 | 7 | 4 | 7 | 7 | 7 |
2Dg_Contig4921 | 254-260 | 3 | 0.50 | 3 | 1 | 2 | 3 | 3 |
2Dg_Contig4563 | 115-130 | 3 | 0.61 | 6 | 4 | 5 | 6 | 6 |
2Dg_Contig10236 | 94-104 | 2 | 0.52 | 6 | 3 | 5 | 6 | 6 |
2BG04035A2D08.r1 | 117-129 | 3 | 0.50 | 7 | 5 | 7 | 7 | 7 |
2Dg_Contig3264 | 135-138 | 3 | 0.45 | 2 | 0 | 2 | 2 | 2 |
2Dg_Contig11508 | 179-188 | 3 | 0.25 | 4 | 3 | 4 | 3 | 3 |
2Dg_Contig12217 | 93-129 | 3 | 0.37 | 11 | 9 | 9 | 8 | 10 |
2Dg_Contig4478 | 216-231 | 3 | 0.50 | 5 | 3 | 5 | 4 | 4 |
2Dg_Contig667 | 184-196 | 3 | 0.12 | 5 | 4 | 5 | 5 | 4 |
3Dg_Contig1483 | 99-107 | 4 | 0.30 | 3 | 1 | 3 | 3 | 3 |