Body composition and gene expression QTL mapping in mice reveals imprinting and interaction effects

BMC Genomic Data

Table 5 Statistics of QTL that interact with reciprocal cross

			Position	Flanking markers^c		am + dm + im^d		am + dm^e		am^f
Chr	Trait^a	Groups	(cM)^b	Left	Right	P-value	% var	P-value	% var	P-value	% var
1	Gastro	pQTL	23	rs3696088	rs13472794	2.85E-06	2.68	4.41E-06	2.32	3.14E-06	2.06
1	Pec	pQTL	23	rs3696088	rs13472794	1.62E-02	0.94	7.04E-02	0.49	5.78E-03	0.71
1	Tnni1	eQTL	24	rs3696088	rs13472794	3.03E-02	1.14	1.25E-02	1.12	4.84E-03	1.02
1	Edl	pQTL	25	rs3696088	rs13472794	4.02E-04	1.81	8.59E-03	0.95	4.14E-03	0.82
1	R	tQTL	29	rs13472794	rs13475931	1.09E-05	3.50	2.03E-02	1.09	1.10E-01	0.36
1	R/D	tQTL	29	rs13472794	rs13475931	1.39E-04	2.82	1.81E-02	1.12	1.65E-01	0.27
6	lengthNA	pQTL	63	mCV24115224	UT_6_123.37228	3.24E-02	0.87	5.46E-02	0.58	2.81E-02	0.48
7	Pec	pQTL	47	rs3676254	rs3656205	3.82E-02	0.84	1.64E-02	0.82	1.25E-01	0.24
7	IGF1	eQTL	53	rs13479422	rs13479471	1.62E-02	1.33	6.47E-03	1.31	5.18E-03	1.02
7	Tail	pQTL	61	rs13479471	rs6275579	3.45E-02	0.86	5.23E-01	0.13	6.42E-01	0.02
11	Fat	pQTL	57	rs3701609	rs8270290	5.27E-02	0.77	1.76E-02	0.81	8.18E-02	0.31
11	AI	pQTL	57	rs3701609	rs8270290	6.46E-02	0.72	2.18E-02	0.76	1.06E-01	0.26
13	R	tQTL	25	rs13481780	rs3678784	1.08E-03	2.21	2.08E-04	2.34	1.26E-03	1.44
13	R/D	tQTL	25	rs13481780	rs3678784	2.05E-03	2.02	4.71E-04	2.12	4.36E-03	1.13
14	R/D	tQTL	18	rs13482096	rs8251329	3.64E-04	2.56	6.77E-04	2.03	1.05E-03	1.50
17	Edl	pQTL	31	rs3023442	rs6395919	2.00E-01	0.47	9.81E-02	0.47	3.46E-02	0.45

^aTrait abbreviations are the same as in Table 1. R: total RNA; R/D: total RNA/total DNA.
^bPeak position of QTL detected in Kosambi centimorgans.
^cFlanking markers (left and right) of the QTL peak. See Additional file 1: Table S6 for marker information.
^dam + dm + im tested the overall interaction, which included additive, dominance, and imprinted pQTL by cross interactions. P-value < 0.05 is shown in italics % var: percentage of phenotypic variance accounted for at QTL position.
^eam + dm tested for non-imprinted interactions, which included additive and dominance pQTL by cross interactions. P-value < 0.05 is shown in italics % var: percentage of phenotypic variance accounted for at QTL position.
^fam tested for additive interactions, which included additive QTL by cross interactions. P-value < 0.05 is shown in italics %var: percentage of phenotypic variance accounted for at QTL position.

ISSN: 2730-6844