Locus | GENE name | HGN | SNP | TAG-SNP | CHR position | HGVS names | HORTEGA GEN% | PIZARRA GEN% | HORTEGA MAF | PIZARRA MAF | HWE p-value (All/controls) |
---|---|---|---|---|---|---|---|---|---|---|---|
1p31.1 | NEURONAL GROWTH REGULATOR 1 | NEGR1 | rs3101336 | 72523773 | NT_032977.8:g.42723104C > T | 96.80 | 100 | 0.237 | 0.252 | 0.472/0.663 | |
rs2568958 | 72537704 | NT_032977.8:g.42737035A > G | 98.86 | 100 | 0.115 | 0.095 | 0.858/0.303 | ||||
rs2815752 | 72585028 | NT_032977.8:g.42784359A > G | 98.93 | 100 | 0.355 | 0.349 | 0.929/0.304 | ||||
1q25.2 | SEC16 HOMOLOG B (S. CEREVISIAE) | SEC16B | rs10913469 | 176180142 | NM_033127.2:c.1881 + 177A > G | 97.80 | 100 | 0.154 | 0.143 | 0.293/1 | |
2q14.1 | INSULIN INDUCED GENE 2 | INSIG2 | rs7566605 | 118552495 | NT_022135.15:g.7543947C > G | 98.20 | 99.77 | 0.454 | 0.439 | 0.706/0.643 | |
2p25.3 | TRANSMEMBRANE PROTEIN 18 | TMEM18 | rs2867125 | 612827 | NT_022327.14:g.612827T > C | 97.47 | 100 | 0.351 | 0.397 | 0.078/0.186 | |
rs6548238 | 624905 | NT_022327.14:g.624905T > C | 98.93 | 99.88 | 0.449 | 0.419 | 0.043/0.141 | ||||
rs4854344 | 628144 | NT_022327.14:g.628144G > T | 98.73 | 99.88 | 0.380 | 0.387 | 0.0521/0.164 | ||||
3q27 | ADIPONECTIN, C1Q AND COLLAGEN DOMAIN | ADIPOQ | rs17300539 | 188042154 | NT_005612.15:g.93054610G > A | 98.53 | 99.54 | 0.433 | 0.403 | 0.032/0.342 | |
rs3774261 | 1 | 188054253 | NM_004797.2:c.215-414A > G | 98.20 | 99.54 | 0.496 | 0.484 | 0.967/0.726 | |||
3q28 | ETS VARIANT 5 | ETV5 | rs7647305 | 187316984 | 95 | 98.85 | 0.118 | 0.125 | 0.902/0.655 | ||
4p13 | GLUCOSAMINE-6-PHOSPHATE DEAMINASE 2 | GNPDA2 | rs10938397 | 44877284 | NT_006238.10:g.4884493A > G | 97.80 | 100 | 0.195 | 0.198 | 0.382/0.340 | |
5q31-q32 | ADRENERGIC, BETA-2-, RECEPTOR, SURFACE | ADRB2 | rs12654778 | 1 | 148185934 | NT_029289.10:g.9368677G > A | 98.13 | 100 | 0.363 | 0.330 | 0.207/0.318 |
6p22.2-p21.3 | PROLACTIN | PRL | rs4712652 | 22186594 | NT_007592.14:g.12936866G > A | 97.07 | 97.58 | 0.346 | 0.375 | 0.804/0.516 | |
10p12 | PHOSPHOTRIESTERASE RELATED | PTER | rs10508503 | 16339957 | NT_077569.2:g.10662847C > T | 96.27 | 99.19 | 0.346 | 0.375 | 0.006/0.015 | |
11p13 | BRAIN-DERIVED NEUROTROPHIC FACTOR | BDNF | rs4923461 | 27613486 | NR_002832.1:c.244-4482G > A | 98.33 | 99.88 | 0.169 | 0.172 | 0.955/0.637 | |
rs925946 | 27623778 | NR_002832.1:c.404 + 5650G > T | 98.47 | 100 | 0.347 | 0.375 | 0.0001/0.003 | ||||
rs10501087 | 27626684 | NR_002832.1:c.404 + 8556G > T | 98.00 | 99.65 | 0.424 | 0.384 | 0.779/0.634 | ||||
rs6265 | 27636492 | NM_001709.3:c.196G > A (p.V66M) | 98.13 | 100 | 0.461 | 0.489 | 0.373/0.426 | ||||
11p14.1 | BDNF OPPOSITE STRAND (NON-PROTEIN CODING) | BDNFOS | rs4074134 | 27603861 | NR_002832.1:c.244-14107G > C | 98.86 | 99.54 | 0.185 | 0.160 | 0.956/0.841 | |
11p11.2 | MITOCHONDRIAL CARRIER HOMOLOG 2 | MTCH2 | rs4752856 | 1 | 47604618 | NM_014342.2:c.681 + 590C > T | 98.40 | 99.77 | 0.240 | 0.261 | 0.928/0.699 |
rs10838738 | 47619625 | NM_014342.2:c.87 + 882T > C | 97.87 | 99.65 | 0.489 | 0.455 | 1/0.545 | ||||
12q13 | FAS APOPTOTIC INHIBITORY MOLECULE 2 | FAIM2 | rs7138803 | 48533735 | NT_029419.11:g.12390774G > A | 98.66 | 99.42 | 0.354 | 0.344 | 0.391/0.111 | |
16p11 | ATAXIN 2-LIKE | ATXN2L | rs8049439 | 28745016 | NM_007245.2:c.466-46T > C | 96.53 | 100 | 0.327 | 0.356 | 0.619/0.512 | |
16q12.2 | FAT MASS AND OBESITY ASSOCIATED | FTO | rs6499640 | 52327178 | NM_001080432.1:c.45 + 31536A > G | 98.07 | 99.88 | 0.173 | 0.173 | 0.694/0.488 | |
rs1421085 | 1 | 52358455 | NM_001080432.1:c.46-43098T > C | 97.87 | 100 | 0.237 | 0.261 | 1/0.719 | |||
rs1121980 | 1 | 52366748 | NM_001080432.1:c.46-34805G > A | 98.93 | 100 | 0.073 | 0.092 | 0.617/0.389 | |||
rs8050136 | 1 | 52373776 | NM_001080432.1:c.46-27777C > A | 98.86 | 99.19 | 0.220 | 0.228 | 0.420/0.470 | |||
rs3751812 | 52375961 | NM_001080432.1:c.46-25592G > T | 98.80 | 100 | 0.381 | 0.376 | 0.471/0.471 | ||||
rs9939609 | 1 | 52378028 | NM_001080432.1:c.46-23525T > A | 98.33 | 99.88 | 0.174 | 0.170 | 0.966/0.876 | |||
rs7190492 | 52386253 | NM_001080432.1:c.46-15300G > A | 98.73 | 99.65 | 0.351 | 0.351 | 0.782/0.438 | ||||
rs8044769 | 52396636 | NM_001080432.1:c.46-4917C > T | 97.33 | 100 | 0.339 | 0.329 | 0.967/0.880 | ||||
16q22-q23 | V-MAF MUSCULOAPONEUROTIC FIBROSARCOMA | MAF | rs1424233 | 78240252 | 99.13 | 99.77 | 0.321 | 0.321 | 0.805/0.52 | ||
16p11.2 | SH2B ADAPTOR PROTEIN 1 | SH2B1 | rs4788102 | 28780899 | NT_010393.15:g.20186477G > A | 98.27 | 99.77 | 0.224 | 0.204 | 0.890/0.466 | |
18q22 | MELANOCORTIN 4 RECEPTOR | MC4R | rs17782313 | 56002077 | NT_025028.13:g.5641943T > C | 98.66 | 100 | 0.455 | 0.464 | 0.215/0.382 | |
18q11-q12 | NIEMANN-PICK DISEASE, TYPE C1 | NPC1 | rs1805081 | 19394430 | NM_000271.3:c.644A > G (p.H215R) | 98.93 | 99.65 | 0.343 | 0.376 | 0.012/0.017 | |
19q13.11 | POTASSIUM CHANNEL TETRAMERISATION | KCTD15 | rs11084753 | 39013977 | NT_011109.15:g.6590355A > G | 97.93 | 99.65 | 0.428 | 0.390 | 0.184/0.336 | |
20q11.23-q12 | CATENIN, BETA LIKE 1 | CTNNBL1 | rs6013029 | 35832994 | NM_030877.3:c.750 + 3134G > T | 98.27 | 99.88 | 0.267 | 0.283 | 0.574/0.482 | |
Xq24 | 5-HYDROXYTRYPTAMINE RECEPTOR 2C | HTR2C | rs3813929 | 113724776 | NT_028405.11:g.250852C > T | 98.47 | 99.88 | 0.434 | 0.399 | 0.168/0.292 |