Probability genotype imputation method and integrated weighted lasso for QTL identification

BMC Genomic Data

Table 1 LRT statistic of markers selected by weighted lasso for G _max , T ₅₀ , T ₁₀ , U ₈₄₁₆ , and AUC ₁₀₀ ordered by genetic distance across 5 chromosomes in Arabidopsis

Marker	chr	gdist	G _max	T ₅₀	T ₁₀	U ₈₄₁₆	*AUC* ₁₀₀
MSAT100008	1	0				0.64
F21M12	1	9.7	0.09
IND4992	1	15.4		0.04		0.32
MSAT110	1	21.6	0.02				0
MSAT108193	1	26.6	0.14				0.21
T27K12	1	49.1	1.27				0.65
F5I14	1	69.6	0				0
MSAT127088	1	82.7	0.15				0.33
MSAT15	1	91.3	0.01			0.81	0
MSAT25	2				0.19
MSAT200897	2	7.9		0.02
MSAT238	2	13	0.16				0.15
MSAT241	2	35	0.09		0
IND216199	2	51.5			0.03
MSAT210	2	57.9			0.17	0.24
MSAT222	2	64.6				0.86
MSAT399	3	3.2	0.68	0.79		0.58	1.03
ATHCHIB2	3	6.6	0.57	0.02	0		0.16
MSAT305754	3	7.9	0.58
MSAT319	3	23.2	0.03				0.13
MSAT332	3	39.5	0.17	0.38	0.51	0.03	0.31
MSAT321	3	48	0.33			0.09	0.25
MSAT318406	3	53.3	0.05				0
MSAT318	3	64.1			0
MSAT370	3	72.2	1.28
MSAT48	4	2	0.09		0.04
MSAT443	4	10.7					0.52
MSAT415	4	33.5	0.45
CIW7	4	45	1.22				0.29
MSAT418	4	47	0.03
MSAT49	4	55.6	0.06	0.60	0.31		0
MSAT468	4	61.8		0.33	0.17
MSAT500027	5	0	0.34				0.5
MSAT514	5	26.6	0	0.16	0.01	0.46	0.09
NGA139	5	30.4	0.42	0.03	0		0.13
MSAT520037	5	67.4	0.9	0.30	0.27	0.01	1.07
MSAT512	5	71.6	0.13		0.39		0.31
MSAT519	5	85	0.26			0.01
K9I9	5	91.2	0.35		0.08		0.25

ISSN: 2730-6844