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Table 10 SNPs associated with protein yield a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs43114141

AVP

−3.77 (2.96)

2.87 (2.35)

5.42 (2.48)

4.42

0.0144

0.0800

0.4680

0.7313

rs137601357

CAST

9.16 (3.09)

5.14 (2.00)

−1.52 (2.37)

−5.53

0.0028

0.0575

0.6131

0.7424

rs109621328

CD14

−39.70 (12.16)

−0.10 (3.65)

5.04 (1.58)

9.79

0.0035

0.0575

0.0146

0.3650

rs41857027

CFDP2

12.23 (4.90)

−1.35 (3.47)

4.31 (1.89)

−1.17

0.6037

0.4223

0.0209

0.3919

rs133449166

CSNK1E

10.22 (3.21)

4.36 (2.12)

−0.42 (2.35)

−5.23

0.0046

0.0575

0.8397

0.7524

rs133175991

DZIP3

−4.58 (7.33)

−0.03 (2.67)

6.11 (1.96)

5.84

0.0206

0.0942

0.8601

0.7589

rs43676052

EPAS1

−2.57 (6.94)

0.11 (2.28)

5.63 (1.83)

5.02

0.0307

0.1171

0.7324

0.7424

rs135071345

FAM5C

4.42 (8.71)

7.84 (2.59)

1.09 (1.72)

−5.28

0.0383

0.1226

0.3144

0.7275

rs109247499

FST

6.97 (2.66)

5.29 (2.03)

−3.76 (2.64)

−5.37

0.0033

0.0575

0.1623

0.6407

rs109830880

GCNT3

14.32 (12.06)

10.53 (3.41)

1.60 (1.99)

−8.26

0.0126

0.0788

0.7110

0.7424

rs110828053

HSD17B7

−2.55 (6.34)

−2.60 (2.45)

5.19 (1.78)

6.14

0.0073

0.0729

0.3258

0.7275

rs133497176

NFKBIL1

−16.34 (8.03)

9.12 (2.91)

2.02 (1.67)

−1.10

0.6802

0.4316

0.0010

0.0750

rs109383758

NLRP9

0.15 (2.64)

1.30 (2.01)

8.03 (2.60)

3.97

0.0226

0.0942

0.2734

0.7275

rs111027720

PARM1

1.28 (2.84)

1.13 (2.04)

8.95 (2.45)

4.15

0.0211

0.0942

0.1269

0.6309

rs109506766

PGR

−4.20 (3.59)

2.38 (2.06)

6.25 (2.15)

4.85

0.0102

0.0729

0.6220

0.7424

rs109629628

PMM2

10.21 (3.60)

4.58 (2.09)

0.05 (2.29)

−4.94

0.0095

0.0729

0.8427

0.7524

rs43572154

ROR2

−6.90 (9.46)

−1.15 (2.61)

4.30 (1.72)

5.49

0.0328

0.1171

0.9776

0.7789

rs43321188

SERPINE2

−5.56 (4.72)

2.32 (2.29)

5.06 (1.90)

4.21

0.0413

0.1226

0.4365

0.7275

rs134031231

TXN2

3.77 (3.14)

7.53 (2.00)

−1.97 (2.41)

−3.81

0.0417

0.12264

0.0135

0.3650

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.