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Table 12 SNPs associated with somatic cell score a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs110127056

ASL

4.36 (0.16)

3.87 (0.11)

4.04 (0.14)

−0.13

0.2141

0.5831

0.0305

0.3684

rs133674837

BDH2

3.81 (0.19)

4.19 (0.11)

3.92 (0.12)

−0.01

0.8913

0.7535

0.0403

0.3993

rs109332658

C7H19orf60

4.65 (0.28)

3.89 (0.12)

4.00 (0.11)

−0.13

0.2968

0.5831

0.0234

0.3684

rs133747802

CD2

3.99 (0.15)

4.66 (0.25)

3.92 (0.12)

−0.28

0.0281

0.0281

0.3365

0.5851

rs41857027

CFDP2

4.31 (0.28)

4.34 (0.20)

3.89 (0.10)

0.26

0.0394

0.0394

0.6166

0.5851

rs134432442

CPSF1

3.73 (0.32)

3.83 (0.13)

4.14 (0.10)

0.26

0.0394

0.0394

0.6166

0.5851

rs109503725

DSC2

3.80 (0.14)

3.88 (0.11)

4.48 (0.14)

0.34

0.0008

0.0008

0.0846

0.3993

rs109247499

FST

3.90 (0.14)

3.89 (0.11)

4.41 (0.14)

0.25

0.0083

0.0083

0.0759

0.3993

rs133497176

NFKBIL1

6.52 (0.45)

3.91 (0.16)

3.97 (0.09)

−0.42

0.0030

0.1167

0.0001

0.0054

rs109629628

PMM2

3.84 (0.20)

3.90 (0.11)

4.24 (0.12)

0.23

0.0359

0.0359

0.4032

0.5851

rs136746215

SEC14L1

4.19 (0.11)

3.99 (0.14)

3.88 (0.08)

−0.15

0.0183

0.0183

0.7550

0.5851

rs132789482

TSHB

4.49 (0.30)

3.81 (0.11)

3.95 (0.06)

−0.02

0.8513

0.7535

0.0307

0.3684

rs134031231

TXN2

3.83 (0.17)

3.94 (0.10)

4.26 (0.13)

0.23

0.0352

0.0352

0.5155

0.5851

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.