Table 2 SNPs associated with daughter pregnancy rate a
SNP | Gene | Least-squares means (SEM) | Linear | Dominance | |||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | 0 | 1 | 2 | Effect | Pvalue | Q value | Pvalue | Q value |
rs109967779 | ACAT2 | 0.85 (.58) | 0.33 (0.36) | −0.98 (0.37) | −1.00 | 0.0015 | 0.0040 | 0.4072 | 0.5155 |
rs133700190 | AP3B1 | 1.67 (1.04) | 0.46 (0.42) | −0.70 (0.32) | −1.17 | 0.0026 | 0.0058 | 0.9680 | 0.5492 |
rs41766835 | APBB1 | 0.20 (1.05) | 0.78 (0.44) | −0.63 (0.31) | −0.95 | 0.0163 | 0.0175 | 0.1417 | 0.5155 |
rs110541595 | ARL6IP1 | −0.40 (0.58) | 0.63 (0.37) | −0.92 (0.41) | −0.50 | 0.1337 | 0.0849 | 0.0079 | 0.4213 |
rs110217852 | BSP3 | −1.82 (0.73) | −0.21 (0.37) | 0.24 (0.35) | 0.81 | 0.0169 | 0.0176 | 0.2764 | 0.5155 |
rs133455683 | C17H22orf25 | 0.83 (0.53) | −0.16 (0.37) | −0.76 (0.40) | −0.77 | 0.0150 | 0.0166 | 0.6773 | 0.5155 |
rs135390325 | C1QB | −3.43 (3.62) | −1.23 (0.53) | 0.25 (0.28) | 1.51 | 0.0061 | 0.0091 | 0.8484 | 0.5155 |
rs109332658 | C7H19orf60 | −1.40 (0.84) | −0.37 (0.39) | 0.20 (0.34) | 0.69 | 0.0558 | 0.0478 | 0.6871 | 0.5155 |
rs135744058 | CACNA1D | 0.29(0.88) | 0.69 (0.37) | −0.81 (0.32) | −1.03 | 0.0038 | 0.0072 | 0.1000 | 0.5155 |
rs137601357 | CAST | −1.35 (0.52) | −0.45 (0.35) | 0.79 (0.41) | 1.09 | 0.0004 | 0.0015 | 0.6970 | 0.5155 |
rs109447102 | CCDC86 | −1.48 (1.10) | −0.74 (0.44) | 0.33 (0.31) | 1.00 | 0.0125 | 0.0153 | 0.8179 | 0.5155 |
rs109621328 | CD14 | 6.90 (2.10) | 0.65 (0.63) | −0.28 (0.28) | −1.66 | 0.0043 | 0.0072 | 0.0291 | 0.5155 |
rs41711496 | CD40 | −0.76 (0.45) | 0.03 (0.35) | 0.73 (0.45) | 0.74 | 0.0150 | 0.0166 | 0.9815 | 0.5510 |
rs41857027 | CFDP2 | −2.53 (0.80) | 0.04 (0.57) | 0.34 (0.30) | 0.92 | 0.0029 | 0.0058 | 0.1016 | 0.5155 |
rs109301586 | COQ9 | −1.42 (0.44) | −0.16 (0.39) | 1.16 (0.42) | 1.29 | <0.0001 | 0.0006 | 0.9458 | 0.5426 |
rs134432442 | CPSF1 | −1.90 (0.94) | −0.36 (0.41) | 0.24 (0.33) | 0.82 | 0.0255 | 0.0239 | 0.4347 | 0.5155 |
rs133449166 | CSNK1E | 0.60 (0.55) | −0.22 (0.36) | −0.86 (0.40) | −0.72 | 0.0224 | 0.0226 | 0.8492 | 0.5155 |
rs109443582 | CSPP1 | −0.61 (3.63) | −1.68 (0.65) | −1.68 (0.29) | 1.61 | 0.0131 | 0.0155 | 0.4607 | 0.5155 |
rs110270752 | DEPDC7 | −2.66 (0.94) | −0.69 (0.43) | 0.31 (0.31) | 1.25 | 0.0010 | 0.0031 | 0.4458 | 0.5155 |
rs109503725 | DSC2 | −1.06 (0.45) | −0.14 (0.35) | 0.52 (0.45) | 0.79 | 0.0099 | 0.0136 | 0.7673 | 0.5155 |
rs109561866 | DYRK3 | −1.58 (2.06) | −1.06 (0.51) | −0.06 (0.29) | 0.95 | 0.0538 | 0.0473 | 0.8323 | 0.5155 |
rs41893756 | FUT1 | −1.08 (0.95) | −1.51 (0.44) | 0.61 (0.30) | 1.47 | 0.0001 | 0.0006 | 0.0448 | 0.5155 |
rs109516714 | GPLD1 | −1.60 (0.57) | −0.22 (0.36) | 0.38 (0.40) | 0.92 | 0.0043 | 0.0072 | 0.4062 | 0.5155 |
rs109711583 | HSD17B12 | 0.76 (0.52) | −0.04 (0.34) | −0.69 (0.42) | −0.72 | 0.0258 | 0.0239 | 0.08603 | 0.5155 |
rs110828053 | HSD17B7 | 0.79 (1.09) | 0.80 (0.42) | −0.62 (0.31) | −1.12 | 0.0044 | 0.0072 | 0.2996 | 0.5155 |
rs111015912 | LDB3 | 2.43 (1.03) | 0.80 (0.39) | −0.74 (0.31) | −1.51 | <0.0001 | 0.0006 | 0.9462 | 0.5426 |
rs134011564 | MARVELD1 | −0.33 (3.63) | 0.07 (0.32) | −1.76 (0.67) | −1.75 | 0.0107 | 0.0141 | 0.5477 | 0.5155 |
rs41859871 | MON1B | 4.57 (2.06) | 0.78 (0.49) | −0.47 (0.29) | −1.50 | 0.0019 | 0.0047 | 0.2680 | 0.5155 |
rs109248655 | MRGPRF | N/A N/A | −1.42 (0.63) | 0.03 (0.28) | 1.45 | 0.0288 | 0.0260 | N/A | N/A |
rs109761676 | MS4A8B | −1.78 (0.88) | −0.77 (0.37) | 0.65 (0.34) | 1.31 | 0.0004 | 0.0015 | 0.7240 | 0.5155 |
rs133762601 | NEU3 | −1.51 (0.60) | −1.39 (0.94) | 0.07 (0.30) | 0.84 | 0.0064 | 0.0091 | 0.4928 | 0.5155 |
rs133497176 | NFKBIL1 | −1.22 (1.38) | −1.31 (0.50) | 0.11 (0.28) | 1.14 | 0.0117 | 0.0149 | 0.3687 | 0.5155 |
rs109383758 | NLRP9 | 0.57 (0.45) | −0.22 (0.34) | −0.78 (0.45) | −0.67 | 0.0253 | 0.0239 | 0.7887 | 0.5155 |
rs134264563 | OCLN | 0.92 (0.80) | 0.31 (0.36) | −0.81 (0.34) | −0.98 | 0.0048 | 0.0075 | 0.6312 | 0.5155 |
rs111027720 | PARM1 | 2.21 (0.47) | 0.11 (0.34) | −2.38 (0.40) | −2.31 | <0.0001 | 0.0006 | 0.6458 | 0.5155 |
rs109813896 | PCCB | 1.51 (0.62) | 0.11 (0.36) | −0.71 (0.37) | −1.02 | 0.0014 | 0.0040 | 0.5355 | 0.5155 |
rs109629628 | PMM2 | 1.43 (0.61) | 0.03 (0.35) | −0.99 (0.38) | −1.16 | 0.0004 | 0.0015 | 0.6895 | 0.5155 |
rs133729105 | RABEP2 | −1.36 (0.57) | −0.38 (0.36) | 0.53 (0.37) | 0.94 | 0.0027 | 0.0058 | 0.9448 | 0.5426 |
rs110660625 | TBC1D24 | 1.21 (0.65) | 0.32 (0.37) | −0.89 (0.36) | −1.10 | 0.0006 | 0.0021 | 0.7474 | 0.5155 |
rs110805802 | TDRKH | −6.62 (1.59) | −1.64 (0.49) | 0.67 (0.29) | 2.70 | <0.0001 | 0.0006 | 0.1513 | 0.5155 |
rs132789482 | TSHB | −3.05 (1.49) | 0.50 (0.56) | 0.40 (0.33) | 0.60 | 0.2270 | 0.1145 | 0.0493 | 0.5155 |
rs110883602 | ZP2 | −1.83 (0.56) | −0.11 (0.42) | 1.09 (0.40) | 1.42 | <0.0001 | 0.0006 | 0.6224 | 0.5155 |