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Table 4 SNPs associated with cow conception rate a

From: Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

SNP

Gene

Least-squares means (SEM)

Linear

Dominance

  

0

1

2

Effect

Pvalue

Q value

Pvalue

Q value

rs109967779

ACAT2

1.89 (1.09)

1.03 (1.03)

−0.61 (−0.61)

−1.34

0.0216

0.0334

0.6559

0.3915

rs133700190

AP3B1

3.89 (1.95)

1.93 (0.78)

−0.82 (0.59)

−2.58

0.0004

0.0023

0.7487

0.3915

rs41766835

APBB1

2.78 (1.98)

1.64 (0.84)

−0.19 (0.60)

−1.67

0.0255

0.0361

0.7889

0.3915

rs110541595

ARL6IP1

−0.23 (1.09)

1.90 (0.69)

−0.97 (0.76)

−0.84

0.1781

0.1081

0.0059

0.1180

rs109669573

BCAS1

−1.68 (1.00)

1.01 (0.67)

1.16 (0.76)

1.24

0.0359

0.0421

0.1387

0.3915

rs135390325

C1QB

−2.74 (6.74)

−2.20 (0.99)

1.26 (0.51)

3.35

0.0012

0.0058

0.6761

0.3915

rs137601357

CAST

−1.33 (0.98)

0.06 (0.65)

2.01 (0.76)

1.71

0.0032

0.0086

0.7283

0.3915

rs109447102

CCDC86

−2.22 (2.06)

−0.40 (0.82)

1.14 (0.57)

1.60

0.0324

0.0408

0.9181

0.3992

rs137673698

CCT8

−10.00 (9.38)

0.18 (0.52)

4.14 (1.66)

4.16

0.0120

0.0204

0.5150

0.3915

rs41857027

CFDP2

−3.70 (1.31)

0.78 (0.93)

0.87 (0.48)

1.65

0.0068

0.0128

0.0517

0.3915

rs109301586

COQ9

−1.53 (0.83)

0.51 (0.73)

2.58 (0.79)

2.06

0.0002

0.0014

0.9796

0.4125

rs134432442

CPSF1

−3.08 (1.77)

−0.14 (0.76)

1.26 (0.60)

1.77

0.0111

0.0199

0.5051

0.3915

rs133449166

CSNK1E

2.02 (1.03)

0.77 (0.67)

−1.42 (0.75)

−1.80

0.0026

0.0086

0.5917

0.3915

rs109443582

CSPP1

1.04 (6.88)

−2.44 (1.23)

0.97 (0.56)

3.01

0.0026

0.0086

0.5917

0.3915

rs41893756

FUT1

−1.16 (1.79)

−1.29 (0.82)

1.56 (0.57)

2.10

0.0033

0.0086

0.2157

0.3915

rs109516714

GPLD1

−2.36 (1.06)

0.67 (0.68)

1.40 (0.75)

1.67

0.0055

0.0110

0.1921

0.3915

rs110828053

HSD17B7

1.96 (2.01)

2.17 (0.78)

−0.55 (0.57)

−2.10

0.0039

0.0091

0.2472

0.3915

rs111015912

LDB3

4.74 (1.94)

1.56 (0.74)

−0.28 (0.59)

−2.12

0.0029

0.0086

0.5836

0.3915

rs134011564

MARVELD1

2.54 (6.20)

0.72 (0.54)

−2.83 (1.13)

−3.48

0.0029

0.0086

0.7852

0.3915

rs41859871

MON1B

7.15 (3.85)

1.56 (0.92)

−0.01 (0.54)

−1.96

0.0296

0.0387

0.3455

0.3915

rs133762601

NEU3

−2.06 (1.13)

−1.56 (1.76)

1.03 (0.56)

1.62

0.0050

0.0106

0.5700

0.3915

rs133497176

NFKBIL1

−2.45 (2.57)

−1.24 (0.93)

0.81 (0.54)

1.90

0.0251

0.0361

0.7873

0.3915

rs134264563

OCLN

1.70 (1.49)

1.11 (0.68)

−0.57 (0.63)

−1.37

0.0352

0.0421

0.5920

0.3915

rs111027720

PARM1

4.31 (0.89)

0.39 (0.64)

−2.30 (0.77)

−3.25

<0.0001

0.0010

0.4499

0.3915

rs109629628

PMM2

3.09 (1.13)

1.10 (0.64)

−1.29 (0.71)

−2.24

0.0002

0.0014

0.8245

0.3915

rs133729105

RABEP2

−1.44 (1.07)

−0.14 (0.67)

1.79 (0.70)

1.68

0.004

0.0091

0.7211

0.3915

rs136746215

SEC14L1

−1.70 (1.02)

3.44 (1.23)

0.83 (0.72)

0.98

0.0988

0.0819

0.0037

0.1180

rs43321188

SERPINE2

4.29 (1.51)

0.09 (0.73)

0.24 (0.60)

−1.10

0.0972

0.0819

0.0389

0.3890

rs110365063

SLC18A2

7.68 (2.61)

0.44 (0.86)

0.41 (0.57)

−1.15

0.1468

0.0998

0.0197

0.2627

rs110660625

TBC1D24

2.36 (1.21)

1.49 (0.69)

−0.90 (0.67)

−1.86

0.0021

0.0086

0.4047

0.3915

rs110805802

TDRKH

−10.71 (3.00)

−2.18 (0.92)

1.66 (0.53)

4.53

<0.0001

0.0010

0.1826

0.3915

rs134282928

WBP1

3.78 (5.57)

−1.21 (0.89)

1.16 (0.58)

2.03

0.0296

0.0387

0.2062

0.3915

rs110883602

ZP2

−2.77 (1.10)

0.94 (0.81)

2.76 (0.78)

2.62

<0.0001

0.0010

0.3468

0.3915

  1. aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP.
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