Table 7 SNPs associated with milk yield a
SNP | Gene | Least-squares means (SEM) | Linear | Dominance | |||||
|---|---|---|---|---|---|---|---|---|---|
| Â | Â | 0 | 1 | 2 | Effect | Pvalue | Q value | Pvalue | Q value |
rs110127056 | ASL | 129.19 (93.50) | 76.85 (65.52) | −110.46 (78.95) | −125.97 | 0.0325 | 0.1316 | 0.4235 | 0.6041 |
rs43114141 | AVP | −219.62 (96.69) | 28.79 (76.21) | 119.38 (80.43) | 163.02 | 0.0070 | 0.0655 | 0.4035 | 0.6041 |
rs109032590 | BOLA-DMB | −196.31 (132.92) | −48.42 (72.66) | 84.09 (63.57) | 137.68 | 0.0348 | 0.1316 | 0.9396 | 0.6799 |
rs135744058 | CACNA1D | −91.04 (169.91) | −118.53 (71.28) | 125.13 (61.36) | 177.10 | 0.0103 | 0.0785 | 0.2251 | 0.5234 |
rs137601357 | CAST | 194.98 (100.40) | 50.25 (63.19) | −101.42 (76.03) | −148.69 | 0.0150 | 0.0922 | 0.9681 | 0.6799 |
rs109621328 | CD14 | −1561.65 (401.52) | −111.12 (117.92) | 87.57 (47.23) | 365.61 | 0.0010 | 0.0165 | 0.0071 | 0.4733 |
rs134432442 | CPSF1 | −415.14 (178.65) | −181.24 (75.87) | 170.79 (59.25) | 323.52 | <0.0001 | 0.0059 | 0.6155 | 0.6557 |
rs110270752 | DEPDC7 | 166.55 (183.04) | 144.62 (81.13) | −83.06 (57.35) | −175.37 | 0.0171 | 0.0933 | 0.0498 | 0.5180 |
rs109503725 | DSC2 | 137.43 (81.39) | −34.35 (61.57) | 126.23 (80.26) | −4.14 | 0.9427 | 0.6564 | 0.0498 | 0.5180 |
rs42075611 | DTX2 | 419.42 | 268.38 | −5.14 | −235.63 | 0.0292 | 0.1274 | 0.7702 | 0.6642 |
| Â | Â | (264.53) | (162.59) | (53.42) | Â | Â | Â | Â | Â |
rs133175991 | DZIP3 | −468.80 (238.09) | −87.50 (84.96) | 114.47 (60.92) | 236.29 | 0.0041 | 0.0537 | 0.5411 | 0.6557 |
rs135071345 | FAM5C | 91.43 (282.11) | 273.07 (82.89) | −85.79 (54.42) | −281.47 | 0.0007 | 0.0153 | 0.0993 | 0.5234 |
rs42339105 | GOLGA4 | 1083.08 (686.77) | −215.11 (108.30) | 19.03 (53.55) | 159.55 | 0.1543 | 0.3156 | 0.0341 | 0.5180 |
rs110828053 | HSD17B7 | −131.10 (2096.70) | −142.60 (79.17) | 93.43 (55.37) | 183.95 | 0.0155 | 0.0922 | 0.3517 | 0.6041 |
rs110789098 | IBSP | −33.11 (96.27) | 134.44 (70.23) | −68.21 (78.36) | −36.41 | 0.5439 | 0.5221 | 0.0406 | 0.5180 |
rs134011564 | MARVELD1 | 1364.97 (686.88) | 26.81 (52.94) | 117.22 (122.41) | 34.81 | 0.7874 | 0.6199 | 0.0432 | 0.5180 |
rs109761676 | MS4A8B | 20.93 (168.91) | 161.86 (71.07) | −101.57 (63.97) | −159.13 | 0.0260 | 0.1216 | 0.0703 | 0.5180 |
rs109383758 | NLRP9 | −125.31 (86.14) | 4.68 (64.67) | 171.33 (84.75) | 148.48 | 0.0108 | 0.0785 | 0.8290 | 0.6642 |
rs111027720 | PARM1 | −119.34 (90.81) | −35.61 (63.47) | 272.73 (77.68) | 204.66 | 0.0005 | 0.0153 | 0.1875 | 0.5234 |
rs109506766 | PGR | −180.89 (117.82) | −39.99 (66.65) | 150.10 (69.77) | 172.17 | 0.0059 | 0.0644 | 0.7877 | 0.6642 |
rs110805802 | TDRKH | 77.83 (317.74) | 142.85 (96.21) | −96.03 (53.67) | −194.34 | 0.0362 | 0.1316 | 0.4145 | 0.6041 |
rs132789482 | TSHB | 399.97 (280.14) | 219.67 (102.03) | 0.15 (56.95) | −211.99 | 0.0240 | 0.1208 | 0.9107 | 0.6799 |
rs134031231 | TXN2 | −37.85 (102.08) | 122.46 (63.64) | −76.26 (77.60) | −44.81 | 0.4682 | 0.4715 | 0.0420 | 0.5180 |
rs134031231 | TXN2 | −37.85 (102.08) | 122.46 (63.64) | −76.26 (77.60) | −44.81 | 0.4682 | 0.4715 | 0.0420 | 0.5180 |