Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle

Table 9 SNPs associated with fat percent ^a

SNP	Gene	Least-squares means (SEM)			Linear			Dominance
		0	1	2	Effect	Pvalue	Q value	Pvalue	Q value
rs109621328	CD14	0.177 (0.051)	0.016 (0.015)	0.029 (0.006)	−0.010	0.4151	0.1531	0.0033	0.1760
rs133747802	CD2	0.009 (0.010)	0.037 (0.017)	0.037 (0.008)	0.014	0.0348	0.0870	0.9223	0.9719
rs134432442	CPSF1	0.207 (0.019)	0.105 (0.008)	−0.025 (0.006)	−0.123	0.0001	0.0018	0.2690	0.4658
rs110270752	DEPDC7	−0.003 (0.023)	0.007 (0.010)	0.046 (0.007)	0.033	0.0004	0.0040	0.3477	0.4920
rs135071345	FAM5C	0.039 (0.036)	0.001 (0.011)	0.042 (0.007)	0.030	0.0053	0.0285	0.0616	0.4480
rs43079452	HSD17B3	0.040 (0.040)	0.055 (0.011)	0.023 (0.007)	−0.025	0.0208	0.0693	0.4153	0.9719
HSP70C895D	HSP70	0.020 (0.019)	0.051 (0.009)	0.020 (0.008)	−0.014	0.1009	0.1185	0.0174	0.3413
rs109761676	MS4A8B	0.036 (0.021)	0.012 (0.009)	0.051 (0.008)	0.023	0.0116	0.0464	0.0256	0.3413
rs134264563	OCLN	0.050 (0.019)	0.038 (0.009)	0.019 (0.008)	−0.017	0.0468	0.0968	0.5628	0.9719
rs41912290	SREBF1	0.053 (0.012)	0.035 (0.009)	0.012 (0.009)	−0.021	0.0057	0.0285	0.8490	0.5196
rs110805802	TDRKH	0.028 (0.041)	0.007 (0.012)	0.038 (0.007)	0.023	0.0484	0.0968	0.9191	0.9719
rs132789482	TSHB	0.007 (0.037)	0.007 (0.014)	0.040 (0.008)	0.014	0.0265	0.0757	0.6093	0.9719
rs137248155	VCAN	−0.011 (0.018)	0.040 (0.009)	0.032 (0.008)	0.010	0.1928	0.1441	0.0249	0.3413

^aSingle nucleotide polymorphism represented as the rs number given by the National Center for Biotechnology Information database SNP. For entries not beginning with rs, the abbreviation given by previous researchers was used.

ISSN: 2730-6844