Table 3 Significantly enriched terms in the biological process category of the gene ontology associated with COSII markers mapped onto the DM genome
From: Linking the potato genome to the conserved ortholog set (COS) markers
GO term | Description | Number in COSII-DM list | Number in TAIR9 list | p-value | FDR |
|---|---|---|---|---|---|
GO:0009108 | coenzyme biosynthetic process | 8 | 98 | 6.6E-07 | 0.00061 |
GO:0051188 | cofactor biosynthetic process | 10 | 191 | 1.7E-06 | 0.00079 |
GO:0043436 | oxoacid metabolic process | 20 | 859 | 0.000009 | 0.0011 |
GO:0034641 | cellular nitrogen compound metabolic process | 15 | 506 | 6.9E-06 | 0.0011 |
GO:0009628 | response to abiotic stimulus | 28 | 1471 | 8.6E-06 | 0.0011 |
GO:0006082 | organic acid metabolic process | 20 | 860 | 9.2E-06 | 0.0011 |
GO:0019752 | carboxylic acid metabolic process | 20 | 859 | 0.000009 | 0.0011 |
GO:0042180 | cellular ketone metabolic process | 21 | 882 | 0.000004 | 0.0011 |
GO:0006519 | cellular amino acid and derivative metabolic process | 17 | 682 | 0.000017 | 0.0017 |
GO:0051186 | cofactor metabolic process | 11 | 308 | 0.00002 | 0.0018 |
GO:0006520 | cellular amino acid metabolic process | 13 | 430 | 0.000022 | 0.0018 |
GO:0044106 | cellular amine metabolic process | 13 | 438 | 0.000027 | 0.002 |
GO:0009308 | amine metabolic process | 14 | 521 | 0.000039 | 0.0028 |
GO:0006732 | coenzyme metabolic process | 8 | 188 | 0.000078 | 0.0052 |
GO:0009651 | response to salt stress | 11 | 366 | 0.000094 | 0.0058 |
GO:0050896 | response to stimulus | 52 | 4057 | 0.00017 | 0.0098 |
GO:0008152 | metabolic process | 114 | 10614 | 0.0002 | 0.011 |
GO:0010035 | response to inorganic substance | 9 | 279 | 0.00023 | 0.011 |
GO:0009657 | plastid organization | 6 | 119 | 0.00024 | 0.011 |
GO:0006970 | response to osmotic stress | 11 | 408 | 0.00024 | 0.011 |
GO:0046686 | response to cadmium ion | 7 | 178 | 0.00035 | 0.015 |
GO:0044237 | cellular metabolic process | 95 | 8722 | 0.00034 | 0.015 |
GO:0010038 | response to metal ion | 8 | 238 | 0.00039 | 0.016 |
GO:0006461 | protein complex assembly | 6 | 134 | 0.00046 | 0.017 |
GO:0070271 | protein complex biogenesis | 6 | 134 | 0.00046 | 0.017 |
GO:0006629 | lipid metabolic process | 16 | 841 | 0.00058 | 0.021 |
GO:0016054 | organic acid catabolic process | 5 | 98 | 0.00075 | 0.025 |
GO:0046395 | carboxylic acid catabolic process | 5 | 98 | 0.00075 | 0.025 |
GO:0009791 | post-embryonic development | 14 | 705 | 0.00082 | 0.026 |
GO:0051641 | cellular localization | 12 | 569 | 0.0011 | 0.034 |
GO:0015979 | photosynthesis | 6 | 162 | 0.0012 | 0.037 |
GO:0006950 | response to stress | 31 | 2320 | 0.0014 | 0.039 |
GO:0044272 | sulfur compound biosynthetic process | 5 | 115 | 0.0015 | 0.043 |