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Table 1 Summary of parameters and statistics estimated for the identified significant SNPs

From: Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height

Ensembl variant ID

Illumina probe ID

BTA14 Position (bp)

n

Effect allele

Allele frequency

CR a(%)

HWE P-value

βb(kg)

SE

T 2 c

GC-T2d

P-value

rs133012258

BovineHD1400007343

25376827

649

A

0.274

100.00

0.920

0.452

0.074

36.858

36.753

1.34×10-9

rs41627948

BovineHD1400007374

25504073

648

B

0.181

99.85

0.110

0.522

0.090

33.202

33.108

8.72×10-9

rs42646720

BovineHD1400007144

24590812

649

B

0.243

100.00

0.390

0.457

0.081

31.999

31.909

1.62×10-8

rs136764901

BovineHD1400007159

24651537

641

B

0.244

98.77

0.200

0.459

0.082

31.546

31.457

2.04×10-8

rs136287861

BovineHD1400006765

23313228

645

A

0.272

99.38

0.766

0.408

0.075

29.580

29.497

5.60×10-8

  1. aCR Call rate.
  2. bβ Estimated allele substitution effect.
  3. cT2 Chi-squared statistics for β: χ 2 = T 2 = β 2 S E 2 .
  4. dGC-T2 Corrected Chi-squared statistics for β. Genomic control correction was performed by dividing the χ2 statistics by the distribution inflation/deflation factor estimate (λ = 1.002831).