Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

Das, Basabdatta; Sengupta, Samik; Parida, Swarup Kumar; Roy, Bipasha; Ghosh, Mrityunjay; Prasad, Manoj; Ghose, Tapas Kumar

doi:10.1186/1471-2156-14-71

BMC Genomic Data

Table 1 Names, source, category, kernel length, kernel shape, amylose content, aroma and group of the 91 genotypes included in this study

From: Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

Genotypes	Source	Category	Kernel length	Kernel shape	Amylose content	Aroma	Group*
Accessions of aromatic genotypes from West Bengal
Badshahbhog	RRS, Chinsurah	WBA	Small	Medium	Low	Fairly strong	B
Chinikamini 1	RRS, Chinsurah	WBA	Small	Round	Low	Moderately strong	B
Chinikamini 2	RRS, Chinsurah	WBA	Medium	Slender	Intermediate	Fairly strong	C
Danaguri	RRS, Chinsurah	WBA	Small	Medium	Low	Moderate	B
Gobindobhog 1	RRS, Chinsurah	WBA	Small	Medium	Low	Strong	B
Gobindobhog 2	RRS, Sekhampur	WBA	Small	Medium	Low	Strong	B
Gopalbhog	SARF, Kashipur	WBA	Small	Medium	Intermediate	Fairly strong	B
Kalogobindobhog	ATC, Fulia	WBA	Medium	Round	Low	Moderate	D
Kalojira	ATC, Fulia	WBA	Small	Bold	Intermediate	Moderately strong	B
Kalonunia	SARF, Kashipur	WBA	Small	Medium	Intermediate	Fairly strong	B
Kaminibhog	SARF, Kashipur	WBA	Small	Round	Intermediate	Fairly strong	B
Kanakchur	SARF, Kashipur	WBA	Small	Round	Low	Moderate	D
Katarihog	RRS, Chinsurah	WBA	Medium	Medium	Low	Fairly strong	A
Khasdhan	RRS, Chinsurah	WBA	Small	Medium	Low	Moderately strong	B
Lilabati	RRS, Chinsurah	WBA	Small	Bold	Low	Fairly strong	B
Mohanbhog	ATC, Fulia	WBA	Small	Bold	Low	Fairly strong	B
Narayan bhog	ATC, Fulia	WBA	Long	Slender	Low	Moderate	D
Narayan purna	ATC, Fulia	WBA	Small	Round	Low	Fairly strong	D
NC 324	RRS, Chinsurah	WBA	Medium	Medium	Low	Fairly strong	B
NC 365	RRS, Chinsurah	WBA	Medium	Slender	Low	Fairly strong	B
Radhunipgol 1	RRS, Chinsurah	WBA	Small	Bold	Low	Fairly strong	B
Radhunipgol 2	RRS, Chinsurah	WBA	Small	Bold	Low	Fairly strong	B
Radhatilak	RRS, Chinsurah	WBA	Small	Medium	Low	Fairly strong	B
Tulaipanji	RRS, Sekhampur	WBA	Small	Medium	Low	Moderately strong	B
Tulsibhog	RRS, Sekhampur	WBA	Small	Bold	Intermediate	Moderate	B
Tulsimanjari	ATC, Fulia	WBA	Small	Medium	Low	Moderate	B
Accessions of aromatic genotypes from West Bengal
Asitkalma	ATC, Fulia	WBNA	Long	Slender	Intermediate	Nil	D
Bahurupi	ATC Fulia	WBNA	Extra long	Medium	Intermediate	Nil	C
Bangalakshmi	ATC Fulia	WBNA	Extra long	Medium	Intermediate	Nil	C
Bangladeshi patnai	ATC Fulia	WBNA	Extra long	Slender	Intermediate	Nil	C
Bhasamanik	ATC Fulia	WBNA	Extra long	Slender	Intermediate	Nil	D
Chamarmani	ATC, Fulia	WBNA	Extra long	Medium	Intermediate	Nil	C
Dudherswar	SARF, Kashipur	WBNA	Medium	Slender	Intermediate	Nil	C
Hatipanjra	RRS, Chinsurah	WBNA	Medium	Slender	Intermediate	Nil	D
Heerasail	RRS, Chinsurah	WBNA	Long	Medium	Intermediate	Nil	D
Kalisankar	ATC, Fulia	WBNA	Small	Medium	Intermediate	Nil	D
kalopahar	RRS, Chinsurah	WBNA	Extra long	Slender	High	Nil	C
Katki	ATC, Fulia	WBNA	Medium	Medium	Intermediate	Nil	D
Kelas	ATC, Fulia	WBNA	Long	Medium	Intermediate	Nil	D
Kele	ATC, Fulia	WBNA	Long	Medium	Intermediate	Nil	C
Kerala sundari	ATC, Fulia	WBNA	Extra long	Slender	Intermediate	Nil	C
Khandagiri	RRS, Chinsurah	WBNA	Extra long	Slender	High	Nil	C
Lakshmansail	RRS, Chinsurah	WBNA	Extra long	Slender	Intermediate	Nil	D
Latasail	RRS, Chinsurah	WBNA	Extra long	Medium	Intermediate	Nil	D
Madina	SARF, Kashipur	WBNA	Extra long	Slender	Intermediate	Nil	D
Mahsuri	RRS, Chinsurah	WBNA	Extra long	Slender	High	Nil	C
Marichsail	SARF, Kashipur	WBNA	Small	Medium	Low	Nil	D
Metedhan	SARF, Kashipur	WBNA	Extra long	Medium	Intermediate	Nil	C
Mugai	SARF, Kashipur	WBNA	Medium	Medium	Intermediate	Nil	D
Para	ATC, Fulia	WBNA	Medium	Medium	Low	Nil	C
Parbol	ATC, Fulia	WBNA	Extra long	Medium	High	Nil	C
Paizam	ATC, Fulia	WBNA	Extra long	Slender	High	Nil	C
Raghusail	RRS, Chinsurah	WBNA	Medium	Medium	High	Nil	D
Raniakanda	ATC, Fulia	WBNA	Extra long	Slender	Intermediate	Nil	C
Raspanjar	RRS, Chinsurah	WBNA	Long	Medium	Intermediate	Nil	D
Sadashankar	RRS, Chinsurah	WBNA	Extra long	Slender	High	Nil	D
Talmari	RRS, Chinsurah	WBNA	Extra long	Medium	High	Nil	C
Accessions from North Eastern States
Aijong	AAU	NA, ASM	Long	Slender	Intermediate	Nil	D
Biroi dhan	NBPGR, Umiam	NA, ASM	Long	Slender	Low	Nil	A
Bhog joha	NBPGR, Umiam	AR, ASM	Medium	Medium	Intermediate	Faint	A
Bhu	NBPGR, Umiam	NA, MZ	Medium	Medium	Intermediate	Nil	A
Boro Chhaiyamora	AAU	NA, ASM	Long	Slender	Intermediate	Nil	D
Buhrimtui	NBPGR, Umiam	NA, MZ	Medium	Medium	Low	Nil	A
Desi Dhan	NBPGR, Umiam	NA, MZ	Medium	Medium	Intermediate	Nil	A
IC524502	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC-524507	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC-311005	NBPGR, Umiam	NA, NG	Medium	Medium	Intermediate	Nil	A
IC-311003	NBPGR, Umiam	NA, NG	Extra long	Slender	Low	Nil	A
IC-524526	NBPGR, Umiam	NA, NG	Medium	Medium	Intermediate	Nil	A
IC-524531	NBPGR, Umiam	NA, NG	Extra long	Medium	Low	Nil	A
IC-524528	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC-524529	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC-311028	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC-524530	NBPGR, Umiam	NA, NG	Extra long	Medium	Intermediate	Nil	A
IC360739	NBPGR, Umiam	NA, ASM	Extra long	Medium	Low	Nil	A
Joha	RRS, Chinsurah	AR, ASM	Extra long	Slender	Intermediate	Moderately strong	B
Kala Boro dhan	NBPGR, Umiam	NA, ASM	Medium	Medium	Very Low	Faint	A
Kachalo	NBPGR, Umiam	NA, ASM	Medium	Medium	Intermediate	Nil	A
Kalojeera	AAU	AR, ASM	Small	Slender	Intermediate	Strong	D
Lal Binni	AAU	AR, ASM	Extra long	Slender	Very low	Faint	D
Malsara dhan	NBPGR, Umiam	NA, ASM	Extra long	Medium	Low	Nil	A
Morianghou	NBPGR, Umiam	NA, MN	Medium	Medium	Intermediate	Nil	A
Prasadbhog	AAU	AR, ASM	Long	Slender	Intermediate	Fairly strong	C
Accessions of check germplasms
IR8	RRS, Chinsurah	ICV	Medium	Medium	Low	Nil	C
IR 36	RRS, Chinsurah	ICV	Medium	Slender	Intermediate	Nil	A
IR 64	RRS, Chinsurah	ICV	Extra long	Slender	Intermediate	Nil	C
Khitish	RRS, Chinsurah	HYV	Extra long	Slender	Intermediate	Nil	C
Lal Swarna	SARF, Kashipur	HYV	Medium	Slender	Intermediate	Nil	D
TN 1	RRS, Chinsurah	HYV	Medium	Slender	Intermediate	Nil	C
Pusa Basmati 1	RRS, Chinsurah	IA	Extra long	Slender	Intermediate	Strong	C
Taraori Basmati	ATC, Fulia	IA	Extra long	Slender	Very Low	Strong	B

Abbreviations: WBA Aromatic landrace from West Bengal, WBNA Non aromatic landrace from West Bengal, AR ASM Aromatic landraces from Assam, NA ASM Non aromatic landraces from Assam, NA MN Non aromatic landraces from Manipur, NA MZ Non aromatic landraces from Mizoram, NA NG Non aromatic landraces from Nagaland, ICV International check variety, HYV High yielding variety, AAU Assam Agriculture University, ATC Agricultural training centre, RRS Rice research station, NBPGR National Bureau of Plant Genetic Resources, SARF State agricultural research farm.
*Groups as was determined by STRUCTURE ANALYSIS.
The classification of kernels different kernel lengths and shapes has been done according to Standard Evaluation System (SES, IRRI) [32]. The data of amylose content and aroma was obtained from previous experiments in our laboratory [33].

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