Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

Das, Basabdatta; Sengupta, Samik; Parida, Swarup Kumar; Roy, Bipasha; Ghosh, Mrityunjay; Prasad, Manoj; Ghose, Tapas Kumar

doi:10.1186/1471-2156-14-71

BMC Genomic Data

Table 2 Name, motif, chromosomal location, annealing temperature and associated phenotypic trait of each SSR marker used for this study

From: Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India

Locus	Motif	Chr*	T**	Associated phenotypic trait	Reference
RM 42	(GA)6	8	65	LAC,CKE,AROMA	Bisaws 2004, Shobha Rani 2006
RM 44	(GA)16	8	55	LAC, L/B AC,CKE	Biswas 2004, Shobha Rani 2006
RM72	(TAT)5C(ATT)15	8	55	Sheath blight resistance	Eizenga et al 2006
RM 80	(CTT)20	8	65	LAC,AROMA	Bisaws 2004, Shobha Rani 2006
RM 112	(GAA)5	2	55	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006, Bai et al., 2010, Lin et al., 2007
RM 149	(AT)10	8	59	HSP 80 gene	Breusegem et al 1994, Eizenga et al., 2006
RM 152	(GGC)10	8	60	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006
RM 182	(AT)16	7	59	Beta amylase gene	Chen, 1993
RM207	(GA)25	2	65	GL,AROMA	Bisaws 2004, Shobha Rani 2006
RM 210	(GA)23	8	55	AROMA	Biswas 2004,
RM 218	(GA)24	3	55	GL	Biswas 2004, Shobha Rani 2006
RM 223	(GA)25	8	55	LAC, L/B AC,CKE	Biswas 2004, Shobha Rani 2006
RM 250	(CT)17	2	60	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006
RM 251	(CT)29	3	55	Sheath blight resistance	Eizenga et al., 2006, Ahmadi and Fotokian 2011
RM 282	(GA)15	3	59	Blast resistance	Eizenga et al., 2006, Ahmadi and Fotokian 2011
RM 284	(GA)8	8	55	LAC, L/B AC,CKE	Biswas 2004, Shobha Rani 2006
RM 310	(GT)19	8	55	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006
RM 337	(CTT)4-19-(CTT)8	8	59	AROMA	Biswas 2004, Shobha Rani 2006
RM 339	(CTT)8CCT9CCT)5	8	59	LAC, L/B AC,CKE	Biswas 2004, Shobha Rani 2006
RM 341	(CTT)20	2	55	Sheath blight resistance	Eizenga et al., 2006
RM 505	(CT)12	7	55	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006
RM 530	(GA)23	2	59	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006, Bai et al., 2010, Lin et al., 2007
RM 569	(CT)16	3	59	GL,GB,G L/B,KL,KB,K L/B	Biswas 2004, Shobha Rani 2006

Chr - Rice chromosome T - Annealing temperature.

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