Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

BMC Genomic Data

Table 8 Additive ¹ estimates of SNPs within genes that have diet-dependent association ² with feed efficiency

Indicator	SNP	BTA	Allele	Gene symbol	Gene name	Diet³				P-Value
						A	B	C	D
RFI	rs108942504	22	A/G^*	TMEM40	transmembrane protein 40	0.27 ± 0.08	0.28 ± 0.08	0.29 ± 0.09	0.22 ± 0.08	1.66E-05
RADG	rs43474365	7	A/G^*	SLC12A2	solute carrier family 12 (sodium/potassium/chloride transporters), member 2	0.00 ± 0.01	−0.03 ± 0.01	0.01 ± 0.01	−0.03 ± 0.01	4.11E-05
RIG	rs108942504	22	A/G^*	TMEM40	transmembrane protein 40	−0.51 ± 0.12	−0.40 ± 0.11	−0.46 ± 0.14	−0.32 ± 0.12	5.80E-05
EI	rs41593945	4	A^*/C	CNPY1	canopy 1 homolog	−0.04 ± 0.07	−0.16 ± 0.07	0.22 ± 0.07	−0.02 ± 0.07	4.80E-05
	rs108942504	22	A/G^*	TMEM40	transmembrane protein 40	0.21 ± 0.08	0.23 ± 0.07	0.24 ± 0.09	0.18 ± 0.08	8.28E-05
	rs42072585	25	A/G^*	CLN3	ceroid-lipofuscinosis, neuronal 3	0.18 ± 0.06	0.21 ± 0.06	0.36 ± 0.06	0.27 ± 0.06	7.02E-05
EG	rs109291606	12	G/T^*	ENOX1	ecto-NOX disulfide-thiol exchanger 1	0.04 ± 0.01	0.04 ± 0.01	0.04 ± 0.01	0.02 ± 0.01	8.93E-05

¹Contrast of the additive estimate between each level of diet and diet E, relative to the minor allele.
²P-value < 0.0001.
³Estimate ± standard error.
^*Minor allele.

ISSN: 2730-6844