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Table 1 Genetic structure of all investigated candidate gene fragments of the phenylpropanoid pathway after resequencing and aligning of 16 barley reference genotypes

From: Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley

Gene fragment

Fragment size [bp]

Exon size [bp]

Intron size [bp]

3' UTR [bp]

No. of InDels

No. of SNPs

SNP frequency per kb

PAL_1

604

604

-

-

0

5

8.3

PAL_2

595

595

-

-

0

35

58.8

C4H_1

495

46

-

449

0

4

8.1

C4H_4

681

681

-

-

0

2

2.9

CHS_1

252

252

-

-

0

0

0

CHS_2

255

255

-

-

0

0

0

CHS_3

369

369

-

-

0

0

0

CHS_GM0287

321

235

-

86

0

11

34.3

CHS_GM0290

661

661

-

-

0

1

1.5

CHS_GM0293

474

474

-

-

0

17

35.9

F3H_1

796

199

597

-

4

48

60.4

F3H_GM022

544

389

109

46

2

3

5.5

DFR_1

618

428

105

85

0

1

1.6

DFR_3

564

459

105

-

1

3

5.3

DFR_4

915

759

105

51

1

3

3.3