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Table 3 SNP and haplotype pattern of cinnamate 4-hydroxylase (C4H) encoding gene, investigated with pyrosequencing (SNPs 1 to 4) depicted in 5' to 3' direction

From: Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley

Haplotypes

SNPs from 5' to 3'

Haplotype frequency (No. of cultivars) according row number and growth habit

Haplotype frequency (No. of cultivars)

 

SNP1

SNP2

SNP3

SNP4

2r-S

6r-S

2r-W

6r-W

 

C4H_H1

T

C

A

A

86

1

38

1

126

C4H_H2

C

T

T

G

2

–

23

33

58

Unknown

Missing SNP information

6

1

–

1

8

Total

    

94

2

61

35

192

  1. All four markers are localized in the 3'-non-coding region of the gene and were observed within a set of 190 European barley cultivars and the mapping parents Steptoe x Morex. S = Spring, W = Winter, 2r = two-rowed, 6r = six-rowed.
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BMC Genomic Data

ISSN: 2730-6844

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