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Table 6 Haplotype pattern resulting from one InDel (ID1) and the SNP4 (in 5’ to 3’ direction) of the dihydoflavonol reductase ( DFR ) encoding gene investigated by pyrosequencing assays in a set of 190 European barley cultivars and the mapping parents Steptoe and Morex

From: Development of SNP markers for genes of the phenylpropanoid pathway and their association to kernel and malting traits in barley

Haplotypes

SNPs from 5' to 3'

Haplotype frequency (No. of cultivars) according row number and growth habit

Haplotype frequency (No. of cultivars)

 

ID1

SNP4

2r-S

6r-S

2r-W

6r-W

 
 

Intron

3'UTR

  

DFR_H1

AA

C

61

–

36

4

101

DFR_H2

–

C

21

–

16

–

37

DFR_H3

AA

T

7

–

6

24

37

DFR_H4

–

T

3

2

2

7

14

unknown

missing SNP information

2

–

1

–

3

Total

  

94

2

61

35

192

  1. ID = Insertion/Deletion, S = Spring, W = Winter, 2r = two-rowed, 6r = six-rowed.
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BMC Genomic Data

ISSN: 2730-6844

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