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Table 4 Significant markers detected by association analysis with pHu values using PLINK

From: SNPs detection in DHPS-WDR83overlapping genes mapping on porcine chromosome 2 in a QTL region for meat pH

SNP (*)

Gene

Gene name

Chromosome

Mb

P

     

UNADJ

FDR

5E_003

DHPS / LOC100519413

deoxyhypusine synthase-like

2

66.69

8.926e-005

0.01937

5M_105

LOC100513647

uncharacterized LOC100513647

2

65.38

0.001777

0.173

5M_011

FARSA / LOC100524304

phenylalanyl-tRNA synthetase alpha chain-like

2

66.28

0.002815

0.173

2M_075

HERC1

HECT and RLD domain containing E3 ubiquitin protein ligase family member 1

1

119.56

0.004006

0.173

5M_006

COL5A3

collagen, type V, alpha 3

2

69.16

0.005301

0.173

3M_020c

ACTR10 / LOC100620619

actin-related protein 10 homolog

1

208.21

0.007129

0.173

3M_020

1

208.21

0.008583

0.173

5E_019

BRD2

bromodomain containing 2

2

61.87

0.008863

0.173

5M_024

TRMT1

tRNA methyltransferase 1 homolog (S. cerevisiae)

2

66.24

0.00914

0.173

5M_032

MAN2B1 / LOC100518647

lysosomal alpha-mannosidase-like

2

66.72

0.009565

0.173

  1. (*) in this column the laboratory codes of the SNPs identified within UniGene cluster selected are indicated.
  2. UNADJ = nominal P-values.
  3. FDR = P-values after False Discovery Rate correction.
  4. The P-value significant after FDR correction is indicated in bold.