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Table 4 The accuracy and precision assessment

From: Evaluation of a target region capture sequencing platform using monogenic diabetes as a study-model

Filtered conditions

SOAPsnp score ≥ 20; Depth ≥ 20;

Percentage of reads supporting ≥ 28%

Target covered:

4944470 bp

Total number of SNPs:

9572

Total number of target SNPs:

6127

YH target in dbSNP:

6463

True positive (TP ratio):

5847 (90.96%)

True negative (TN ratio):

4937762 (99.99%)

False negative (FN ratio):

581 (9.04%)

False positive (FP ratio):

280 (0.006%)

Accuracy (%)((TP + TN)/(TP + FN + TN + FP)):

99.98

Precision (%)(TP/(TP + FN)):

95.43

  1. The assessment is calculated based on qualified SNPs filtered by SOAPsnp score, depth, and supporting reads ratio.
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BMC Genomic Data

ISSN: 2730-6844

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