From: Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle
Trait1 | Gene ID2 | BTA3 | Ref. SNP4 | BPPos5 | MAF6 | n7 | Estimate ± SE8 | P-value* |
---|---|---|---|---|---|---|---|---|
LR | 539020 | 1 | rs43246339 | 81372644 | 0.165 | 664 | 1.151 ± 0.266 | 0.00002 |
IFR | 539020 | 1 | rs43246339 | 81372644 | 0.167 | 687 | -0.622 ± 0.172 | 0.0003 |
IFR | 614882 | 2 | rs43287969 | 1280728 | 0.329 | 648 | 0.404 ± 0.143 | 0.005 |
F3 | 532545 | 2 | rs43307594 | 43392336 | 0.379 | 847 | 0.473 ± 0.15 | 0.0016 |
IFR | 538378 | 2 | rs42315485 | 58475918 | 0.035 | 687 | -0.968 ± 0.355 | 0.0065 |
Marbling | 522946 | 3 | ss914082840 | 2555332 | 0.445 | 851 | -0.097 ± 0.028 | 0.00066 |
Marbling | 522946 | 3 | ss914082841 | 2557106 | 0.379 | 837 | -0.092 ± 0.031 | 0.003 |
LMA | 532836 | 4 | rs41599809 | 96565402 | 0.107 | 848 | 3.08 ± 0.975 | 0.0016 |
LMA | 532836 | 4 | ss914082853 | 96570062 | 0.37 | 848 | -1.807 ± 0.617 | 0.0035 |
Marbling | 538086 | 5 | ss914082862 | 50301829 | 0.414 | 851 | -0.091 ± 0.03 | 0.0025 |
IFR | 503621 | 6 | ss914082876 | 32016672 | 0.131 | 687 | 0.625 ± 0.191 | 0.001 |
HCW | 616908 | 6 | rs41574929 | 36099801 | 0.397 | 949 | 5.277 ± 1.916 | 0.006 |
Marbling | 540329 | 6 | ss914082878 | 37288379 | 0.166 | 851 | -0.117 ± 0.038 | 0.002 |
IFR | 540329 | 6 | ss914082878 | 37288379 | 0.14 | 687 | -0.535 ± 0.178 | 0.0028 |
HCW | 540329 | 6 | ss914082878 | 37288379 | 0.162 | 959 | 7.16 ± 2.468 | 0.0038 |
Marbling | 536203 | 6 | ss914082880 | 37386084 | 0.174 | 850 | -0.121 ± 0.037 | 0.001 |
IFR | 536203 | 6 | ss914082880 | 37386084 | 0.152 | 685 | -0.511 ± 0.172 | 0.003 |
HCW | 530393 | 6 | rs29010894 | 37433382 | 0.124 | 958 | -7.542 ± 2.706 | 0.005 |
IFR | 530393 | 6 | rs43702346 | 37439120 | 0.276 | 684 | -0.393 ± 0.14 | 0.005 |
SQF | 616568 | 7 | ss914082884 | 10135670 | 0.129 | 928 | -0.022 ± 0.008 | 0.004 |
GRF | 616568 | 7 | ss914082884 | 10135670 | 0.13 | 819 | -0.572 ± 0.206 | 0.0056 |
Fat3 | 541122 | 9 | rs43013785 | 33837458 | 0.487 | 841 | 0.431 ± 0.148 | 0.004 |
IFR | 529759 | 11 | ss914082698 | 80982741 | 0.066 | 687 | 0.928 ± 0.28 | 0.00097 |
Marbling | 537649 | 12 | ss914082709 | 13011713 | 0.294 | 851 | 0.125 ± 0.033 | 0.0002 |
F3 | 537649 | 12 | ss914082709 | 13011713 | 0.293 | 847 | 0.443 ± 0.171 | 0.0097 |
IFR | 535653 | 12 | rs43694364 | 15748029 | 0.483 | 687 | 0.379 ± 0.131 | 0.0039 |
GRF | 509602 | 12 | ss914082715 | 76885563 | 0.411 | 845 | 0.409 ± 0.137 | 0.0029 |
LR | 509602 | 12 | ss914082715 | 76885563 | 0.425 | 663 | -0.584 ± 0.201 | 0.0037 |
F3 | 509602 | 12 | ss914082715 | 76885563 | 0.411 | 846 | 0.431 ± 0.15 | 0.004 |
IFR | 509602 | 12 | ss914082716 | 76889667 | 0.413 | 686 | -0.503 ± 0.135 | 0.0002 |
LYR | 509602 | 12 | ss914082716 | 76889667 | 0.413 | 663 | 0.748 ± 0.208 | 0.0003 |
SQFR | 509602 | 12 | ss914082716 | 76889667 | 0.414 | 684 | -0.355 ± 0.119 | 0.003 |
F3 | 509602 | 12 | ss914082716 | 76889667 | 0.417 | 846 | -0.439 ± 0.153 | 0.004 |
GRF | 509602 | 12 | ss914082716 | 76889667 | 0.418 | 845 | -0.381 ± 0.14 | 0.0065 |
F3 | 512287 | 15 | ss914082741 | 4101726 | 0.099 | 843 | 0.865 ± 0.254 | 0.00068 |
Fat1 | 521326 | 16 | rs41821600 | 64875340 | 0.038 | 849 | -2.099 ± 0.627 | 0.00085 |
Marbling | 540672 | 20 | rs43006895 | 54577104 | 0.479 | 851 | 0.1 ± 0.029 | 0.0006 |
F2 | 540672 | 20 | rs43006895 | 54577104 | 0.478 | 850 | 0.904 ± 0.287 | 0.0017 |
BFR | 534312 | 21 | rs41980260 | 33909131 | 0.282 | 683 | -0.162 ± 0.057 | 0.0049 |
BFR | 534312 | 21 | rs41980261 | 33909583 | 0.282 | 684 | -0.151 ± 0.057 | 0.008 |
LMA | 512725 | 23 | ss914082809 | 32192762 | 0.488 | 848 | 1.609 ± 0.611 | 0.0086 |
LMA | 512725 | 23 | ss914082812 | 32207295 | 0.283 | 848 | 1.84 ± 0.703 | 0.009 |
LMA | 504741 | 24 | rs42047790 | 36412358 | 0.445 | 848 | 2.087 ± 0.625 | 0.0009 |
LMA | 540050 | 26 | rs42106947 | 37495213 | 0.488 | 848 | -1.766 ± 0.611 | 0.004 |
BFR | 518905 | 27 | ss914082824 | 39712547 | 0.015 | 684 | 0.714 ± 0.231 | 0.002 |
IFR | 515895 | 27 | ss914082827 | 39798548 | 0.076 | 687 | 0.654 ± 0.237 | 0.006 |
SQFR | 515895 | 27 | ss914082827 | 39798548 | 0.077 | 685 | 0.569 ± 0.208 | 0.006 |