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Table 2 QTL identified for grain yield (GY), days to 50% flowering (DTF), and plant height (PH) under upland and lowland conditions through CIM

From: Multiple major QTL lead to stable yield performance of rice cultivars across varying drought intensities

Trait Ecosystem Chromosome Locus name Interval Peak marker Peak position LOD  A R2
GY LSS 3 qDTY 3.1 RM168-RM468 RM293 124.0 6.3 165.3 7.9
  LSS 6 qDTY 6.1 RM586-RM217 RM587 9.7 7.5 188.6 9.3
  LSS 6 qDTY 6.2 RM121-RM541 RM3 75.7 7.0 260.8 8.6
  LMS II 3 qDTY 3.1 RM168-RM468 RM293 122.0 5.1 171.5 6.9
  LNS II 3 qDTY 3.1 RM168-RM468 RM55 114.0 9.0 −377.4 10.7
  LNS II 6 qDTY 6.3 RM528-RM400 RM528 105.7 4.3 307.6 5.2
  UMiS 3 qDTY 3.1 RM168-RM468 RM293 124.0 3.5 627.0 15.0
  UMiS 6 qDTY 6.1 RM586-RM217 RM587 9.7 9.5 976.4 35.6
  UMiS 6 qDTY 6.2 RM121-RM541 RM3 75.7 4.8 1083.3 19.9
DTF LSS 3 qDTF 3.1 RM168-RM468 RM55 114.0 9.5 −1.7 11.3
  LSS 6 qDTF 6.1 RM586-RM217 RM217 13.7 6.4 −1.4 7.7
  LMS I 3 qDTF 3.1 RM168-RM468 RM55 114.0 10.0 −1.9 11.9
  LMS II 3 qDTF 3.1 RM168-RM468 RM55 114.0 4.7 −1.1 5.8
  LMS II 6 qDTF 6.1 RM586-RM217 RM217 15.7 3.7 −0.9 4.6
  LNS II 3 qDTF 3.1 RM168-RM468 RM55 114.0 9.0 −1.3 10.8
  LNS II 6 qDTF 6.1 RM586-RM217 RM217 13.7 5.7 −1.0 6.9
  UMiS 3 qDTF 3.1 RM168-RM468 RM293 124.0 3.4 −3.4 14.6
  UMiS 6 qDTF 6.1 RM586-RM217 RM587 9.7 6.7 −4.6 26.5
PH LSS 6 qDTH 6.1 RM275-RM528 RM528 103.7 6.4 3.3 7.8
  LMS I 3 qDTH 3.1 RM293-RM571 RM468 128.0 3.4 −1.7 4.2
  LMS II 6 qDTH 6.1 RM275-RM528 RM528 103.7 4.5 2.7 5.5
  LNS I 6 qDTH 6.1 RM275-RM528 RM528 103.7 5.6 4.1 6.8
  LNSII 6 qDTH 6.1 RM275-RM528 RM528 103.7 5.9 4.0 7.1
  1. R2: percentage of phenotypic variance explained by marker closest to the peak; A: additive effect as percentage of trial mean; LSS: lowland severe stress; LMS: lowland moderate stress; LNS: lowland non-stress; UMiS: upland mild stress.