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Table 2 List of significant SNPs with p-value < 1.1e-7 in the Caries dataset

From: Genome-wide Two-marker linkage disequilibrium mapping of quantitative trait loci

SNP ID

Gene

Chr

Coordinate

Allele

MAF

PsmAT

PsmLD

Phaplo

PtmLD

rs7607421

–

2

220500564

C/T

0.390

3.2E-08 *

2.1E-04

2.0E-06

6.9E-05

rs10790497

CNTN5

11

98539071

A/G

0.346

8.8E-01

8.2E-01

1.7E-03

2.6E-08 ‡

rs7319311

COL4A2

13

109828579

A/G

0.326

5.8E-02

2.7E-02

2.8E-02

1.0E-07 ‡

  1. PsmAT, PsmLD, Phaplo, PtmLD: p values for corresponding methods. *Significant SNPs identified by smAT. ‡Significant SNPs identified by tmLD.