| Controls | Clefts | p | CL | p | CP | p | CLP | p |
---|
MD
| 71.7 | 102.7 | 1e-4 | 87.8 | 0.084 | 95.2 | 0.067 | 128.5 | 1e-5 |
PennCNV
| 61.3 | 70.5 | 0.051 | 81.1 | 0.006 | 52.5 | 0.923 | 85.7 | 0.041 |
- MD: de novo deletions with coverage of at least ten markers inferred by MinimumDistance[44]; PennCNV: de novo deletions with coverage of at least ten markers inferred by PennCNV[43]. CL: cleft lip; CP: cleft palate; CLP: cleft lip and palate. The p-values were derived using a one-sided Wilcoxon rank-sum test to assess a potential increase in width of de novo deletions in the cleft offspring versus controls.