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Table 1 Genotyped markers, frequencies of alleles and genotypes, and test for Hardy-Weinberg equilibrium

From: Associations between variants of FADS genes and omega-3 and omega-6 milk fatty acids of Canadian Holstein cows

Marker1

Location/characteristic of SNP

Allele

Count

Frequency

Genotype

Count

Frequency

Test for HWE

Lab Id

rs#

 

P-values

FADS1-01

rs136261927

Intron

C

685

0.812

CC

275

0.652

0.4181

   

T

159

0.188

CT

135

0.320

 
      

TT

12

0.028

 

FADS1-07

rs42187261

Exon, synonymous (306Tyr > Tyr)

C

349

0.428

CC

70

0.172

0.3695

  

T

467

0.572

CT

209

0.512

 
      

TT

129

0.316

 

FADS1-08

rs41652284

Intron

C

626

0.742

CC

226

0.536

0.1289

   

T

218

0.258

CT

174

0.412

 
      

TT

22

0.052

 

FADS2-05

rs211263660

Intron (splice site)

C

523

0.612

CC

163

0.382

0.6135

   

T

331

0.388

CT

197

0.461

 
      

TT

67

0.157

 

FADS2-14

rs211580559

Exon, non synonymous (294 Ala > Val)

C

517

0.597

CC

159

0.367

0.3746

  

T

349

0.403

CT

199

0.460

 
      

TT

75

0.173

 

FADS2-19

rs210169303

3′UTR (microRNA binding site)

C

589

0.731

CC

219

0.543

0.3764

   

T

217

0.269

CT

151

0.375

 
      

TT

33

0.082

 

FADS2-23

rs109772589

3′UTR

A

673

0.807

AA

267

0.640

0.2099

   

G

161

0.193

AG

139

0.333

 
      

GG

11

0.026

 
  1. 1Lab Id = lab notation of SNPs, rs# = reference SNP ID number.