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Table 2 Effect of the identified SNPs in PRKAG3 on protein sequence

From: A combination of two variants in PRKAG3is needed for a positive effect on meat quality in pigs

Reference Position on chromosome 15, bp Amino acid co-ordinate Transcript SIFTa
K24E 133801207 47 ENSSSCT00000017641 0.16
K24E 133801207 24 ENSSSCT00000033825 0.01
T30N 133802071 80 ENSSSCT00000017641 0.44
T30N 133802071 57 ENSSSCT00000033825 0.20
T30N 133802071 30 ENSSSCT00000036402 0.32
I41V 133802103 91 ENSSSCT00000017641 0.05
I41V 133802103 68 ENSSSCT00000033825 0.07
I41V 133802103 41 ENSSSCT00000036402 0.03
G52S 133802136 102 ENSSSCT00000017641 0.11
G52S 133802136 79 ENSSSCT00000033825 0.13
G52S 133802136 52 ENSSSCT00000036402 0.13
L53P 133802499 103 ENSSSCT00000017641 0.04
L53P 133802499 80 ENSSSCT00000033825 0.05
L53P 133802499 53 ENSSSCT00000036402 0.07
K131R 133802733 181 ENSSSCT00000017641 1.00
K131R 133802733 131 ENSSSCT00000036402 1.00
K131R 133802733 158 ENSSSCT00000033825 1.00
P134L 133802742 184 ENSSSCT00000017641 0.58
P134L 133802742 134 ENSSSCT00000036402 0.58
P134L 133802742 161 ENSSSCT00000033825 0.58
I199V 133803828 249 ENSSSCT00000017641 1.00
I199V 133803828 199 ENSSSCT00000036402 1.00
I199V 133803828 226 ENSSSCT00000033825 1.00
  1. aSIFT score <0.05 is considered as damaging.