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Table 1 Summary of parameters used in simulation

From: Association studies including genotype by environment interactions: prospects and limits

Symbol

Definition

Range

n

Sample size

90a to 277b

pi

Original phenotype of individual i

Field-based flowering time score a,b

r

Effect ratio, difference of effect associated with a variant

0 to 1.5

σG

Standard deviation of the phenotype

6.83a; 8.72b

λ

Numeric value measuring the change in SNP effect between environments

0.05 to 2

q

Mean SNP allele frequency

0.05; 0.25; 0.50

q0

Mean ancestry

0.28a; 0.49b

h2

heritability

0.25; 0.75

  1. abased on pearl millet real dataset.
  2. bbased on maize real dataset.