Skip to main content

Advertisement

Table 3 QTL regions associated with fatty acid composition in Nellore steers by Bayes B

From: Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle

Group Traits QTL window (first and last SNP) Number of SNP /window1 %Variance explained SNP window1 Chr Map position (UMD 3.1 bovine assembly) PCG2
Saturated fatty acid C14:0 rs43328164 - rs134696015 295 1.06 3 6009105 - 6999643 - 3
  C18:0 rs133274959 - rs136576856 213 3.46 3 25008982 - 25990012 HMGCS2, PHGDH, HSD3B1, HAO2
  C16:0 rs134160160 - rs109942510 285 1.38 3 26002777 - 26998679 WARS2
  C14:0 rs41627556 - rs110731616 332 1.43 9 36013595 - 36997263 GNG11, RGS5
  C18:0 rs136405986 - rs137105475 114 1.08 10 74001100 - 74957582 DHRS7
  C18:0 rs132804279 - rs109645596 102 2.08 11 105009792 - 105985714 NUP214
  C16:0 rs109773631 - rs135618512 277 1.53 12 13000697 - 13997298 -
  C12:0 rs42924061 - rs134942057 214 3.48 12 60000226 - 60994461 SLITRK6
Monounsat. fatty acid C14:1 cis-9 rs137683417 - rs29003360 232 1.86 2 26002605 - 26999718 GAD1, Sp5
  C18:1 cis-9 rs134160160 - rs109942510 285 1.40 3 26002777 - 26998679 WARS2
  C16:1 cis-9 rs133274959-rs136576856 213 1.42 3 25008982 - 25990012 HMGCS2, PHGDH, HSD3B1, HAO2
  C18:1 cis-9 rs133274959-rs136576856 213 2.57 3 25008982 - 25990012 HMGCS2, PHGDH, HSD3B1, HAO2
  C18:1 t-16 rs133728493 - rs109630757 264 2.56 6 50008629 - 50996673 -
  C16:1cis-9 rs135892505 - rs109693564 184 1.04 7 80006438 - 80997126 -
  C16:1cis-9 rs136405986 - rs137105475 114 1.18 10 74001100 - 74957582 DHRS7
  C14:1cis-9 rs110517663 - rs137137362 127 1.43 11 27000446 - 27993515 ABCG5
  C18:1 cis-9 rs109773631 - rs135618512 277 1.91 12 13000697 - 13997298 -
  C14:1 cis-9 rs137754875 - rs135670282 203 1.55 12 66002783 - 66997356 GPC6
  C18:1 t-16 rs109872854 - rs134277482 250 2.17 17 41001273 - 41991683 RAPGEF2, RPS27
Polyunsat. fatty acid C22:5 n-3 rs132839318 - rs134264692 306 3.35 3 27001604 - 27997941 SPAG7, WDR3
  C18:2 t-11c-15 rs42404785 - rs133183089 144 1.69 3 72000121 - 72997801 AQP7, LOXL2
  C18:3 n-6 rs109612389 - rs133661384 205 1.34 7 34004443 - 34998434 -
  C18:2 t-11c-15 rs135377389 - rs133297940 267 3.49 8 68013821 - 68993778 -
  C22:5 n-3 rs110411459 - rs137802105 202 4.74 10 29000222 - 29962997 -
  C20:5 n-3 rs137823965 - rs42507195 199 2.19 10 49005824 - 49980174 RORA
  C18:3 n-3 rs42582725 - rs133775322 132 1.33 17 24002089 - 24987264 -
  C18:2 t-11c-15 rs137602675 - rs133056879 187 1.01 26 20001875 - 20999270 -
  C20:3 n-6 rs134302284 - rs136338106 144 1.77 27 26000833 - 26975692 -
Total of MUFA MUFA rs133274959 - rs136576856 213 3.24 3 25008982 - 25990012 HMGCS2, PHGDH, HSD3B1, HAO2
   rs134160160 - rs109942510 285 1.13 3 26002777 - 26998679 WARS2
Total of n-3 n-3 rs110411459 - rs137802105 202 2.59 10 29000222 - 29962997 -
   rs137823965 - rs42507195 199 2.25 10 49005824 - 49980174 -
   rs1322839318 - rs134264692 306 1.37 3 27001604 - 27997941 SPAG7, WDR3
Total of n-6 n-6 rs134302284 - rs136338106 144 2.47 27 26000833 - 26975692 -
  1. 11 Mb window.
  2. 2Positional candidate genes.
  3. 3No putative candidate gene associated with the trait.