Skip to main content

Table 1 Loci presence in blast strains from different regions at each locus

From: Rapid evolution of avirulence genes in rice blast fungus Magnaporthe oryzae

Group

 

Strains carrying Avrgenes1

Haplotype diversity2

JS

YN

GD

SC

OTs

Total

Total numbers of strains

14

13

6

26

3

62

AVR genes

AVR-Pita1 (881 bp)

9

11

3

21

3

47

0.67

PWL2 (438 bp)

7

10

6

21

2

46

0.46

AVR-Pik (342 bp)

13

11

4

25

3

56

0.96

AVR-Pii (213 bp)

1

0

1

8

0

10

0.16

AVR-Pia (276 bp)

3

0

0

2

0

5

0

ACE1 3 (12694 bp)

KS subunit

11

10

5

19

2

47

0.26

AT subunit

12

7

4

19

1

43

0

Control genes

CAL

14

13

6

26

3

62

0

ACT

14

13

6

26

3

62

0

ITS

14

13

6

26

3

62

0.69

CHS1

14

13

6

26

3

62

0.49

PTH11

14

13

6

26

3

62

0

Hik

14

13

6

26

3

62

0

ABC2

14

13

6

26

3

62

0

  1. 1JS, Jiangsu province in east of China; YN, Yunnan province in southwest of China; GD, Guangdong province in south of China; SC, Sichuan province in midwest of China; OTs, three strains from other regions, one from Anhui province in east of China, one from Hubei province in central China and one from Japan, respectively.
  2. 2Haplotype diversity calculated by Nei 1987, equations 8.4 and 8.12 but replacing 2n by n.
  3. 3For ACE1 gene, which is as large as 12 kb and can’t be cloned as a whole, we picked 2 subunits of the gene, β-ketoacyl synthase (KS subunit) and acyltransferase (AT subunit) as the tested subunits to imply the characteristics of the whole gene. From 37 strains have we successfully cloned both of the two loci.
Back to article page

BMC Genomic Data

ISSN: 2730-6844

Contact us