Skip to main content

Table 5 QTL detected for chalkiness traits in population ZS97/WYJ

From: Comparative mapping of chalkiness components in rice using five populations across two environments

Traita

Chrb

Interval

QTL

Wuhan

LOD

Addc

% Vard

CR

     
 

2

RM263-RM221

qCR2-W-

3.3

-6.63

8.7

 

4

RM335-MRG5943

qCR4-W-

3.9

-5.30

6.9

 

7

RM82-RM125

qCR7-W-

3.4

-6.06

7.3

 

9

RM296-RM285

qCR9-W+

3.8

6.28

7.8

CA

     
 

3

MRG2803-RM282

qCA3-W-

5.4

-4.15

8.6

 

6

RM190-RM510

qCA6-W+

3.9

3.47

6.0

 

9

RM285-MRG6094

qCA9-W+

3.6

3.20

5.1

WCR

     
 

3

RM36-MRG0002

qWCR3-1W-

9.0

-12.56

14.3

 

3

RM130-RM570

qWCR3-2W-

3.1

-6.90

4.3

 

4

RM335-MRG5943

qWCR4-1W-

13.8

-14.17

18.2

 

4

RM142-RM177

qWCR4-2W+

3.2

8.09

6.3

 

4

RM252-RM241

qWCR4-3W+

10.4

11.92

12.9

 

8

RM80-RM149

qWCR8-W-

4.3

-9.29

8.3

 

9

RM285-MRG6094

qWCR9-W+

8.6

12.40

13.9

WBR

     
 

1

RM84-RM283

qWBR1-1W-

4.1

-8.59

7.7

 

1

RM129-RM9

qWBR1-2W+

4.2

8.08

6.8

 

5

RM87-RM334

qWBR5-W+

2.5

6.09

3.9

 

8

RM152-RM38

qWBR8-W-

13.3

-14.04

17.6

 

9

RM296-RM285

qWBR9-W+

7.6

10.73

10.3

 

11

RM536-RM287

qWBR11-W-

8.0

-10.29

9.4

WCA

     
 

1

RM259-RM312

qWCA1-W+

3.8

4.01

13.8

 

4

RM335-MRG5943

qWCA4-W-

4.4

-3.88

12.8

WBA

     
 

1

RM84-RM283

qWBA1-W-

2.5

-2.64

7.1

 

7

RM505-RM18

qWBA7-W-

2.0

-2.53

6.5

 

8

RM210-RM80

qWBA8-W+

3.0

2.61

8.0

 

11

RM536-RM287

qWBA11-W-

4.8

-3.95

15.9

  1. aCR, chalkiness rate; CA, chalkiness area; WCR, white core rate; WBR, white belly rate; WCA, white core area; WBA, white belly area.
  2. bChr, chromosome.
  3. cThe additive effects caused by QTL; the positive value indicates that the ZS97 allele increase the trait score, while the negative value indicates that the ZS97 allele decrease the trait score.
  4. dThe phenotypic variation explained by QTL.