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Table 4 AR and Tex11 SNP association analysis in the tropical composite population

From: Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle

Trait SNP P Allele Effect SE %Va
PNS18 AR1_In4 0.0127 T −6.384 2.551 5.646
PNS18 Tex11_r38k 0.0072 G −6.181 2.29 6.911
PNS18 Tex11_g297d 0.5780 A −1.655 2.992 0.299
PNS18 Tex11_r696h 0.0063 G −6.266 2.282 7.169
PNS24 AR1_In4 0.0784 T −4.137 2.347 2.368
PNS24 Tex11_r38k 0.0002 G −7.838 2.101 11.102
PNS24 Tex11_g297d 0.0594 A −5.127 2.715 2.863
PNS24 Tex11_r696h 0.0006 G −7.31 2.121 9.746
SC12 AR1_In4 5.02 x 10-6 T −1.427 0.3097 7.976
SC12 Tex11_r38k 4.00 x 10-15 G −2.155 0.2669 23.754
SC12 Tex11_g297d 3.35 x 10-5 A −1.517 0.3628 7.096
SC12 Tex11_r696h 2.22 x 10-16 G −2.28 0.2691 26.837
SC18 AR1_In4 4.98 x 10-7 T −1.565 0.3077 10.584
SC18 Tex11_r38k 4.88 x 10-14 G −2.066 0.2674 24.086
SC18 Tex11_g297d 7.45 x 10-4 A −1.222 0.3604 5.079
SC18 Tex11_r696h 1.44 x 10-14 G −2.137 0.2705 26.009
SC24 AR1_In4 1.66 x 10-7 T −1.548 0.2922 10.772
SC24 Tex11_r38k 3.03 x 10-12 G −1.839 0.2579 19.853
SC24 Tex11_g297d 0.0066 A −0.9469 0.3471 3.173
SC24 Tex11_r696h 2.18 x10-12 G −1.865 0.2597 20.607
  1. Significance (P), allele substitution effect (Effect) for the named allele of each SNP, its standard error (SE) and percentage of additive variance (%Va) explained by 3 SNP genotypes in Tex11 and 1 SNP in AR on Scrotal Circumference (SC) at 12, 18 and 24 months of age and on the percentage of normal sperm (PNS) at 18 and 24 months of age.