Patterns of nucleotide diversity and phenotypes of two domestication related genes (OsC1 and Wx) in indigenous rice varieties in Northeast India

Table 1 Rice variety names, phenotype, and functional mutations at the Wx and OsC1 genes

Variety	Grain quality	Wx5′ splice site	WxCTn	Apiculus color	*OsC1*10 bp deletion
Bas Beroin	Glutinous	T	17	Colored	No
Til Bora	Glutinous	T	17	Colored	No
Ranga Borah	Glutinous	G	11	Colorless	Yes
Kakiberoin	Glutinous	G	11	Colorless	Yes
Borua Beroin	Glutinous	T	17	Colorless	No
Joha	Non Glutinous	G	18	Colored	No
Bherapawa	Non Glutinous	G	17	Colored	No
Lallatoi	Non Glutinous	G	11	Colored	Yes
Kawanglawang	Non Glutinous	T	17	Colored	No
Hati Hali	Non Glutinous	G	18	Colored	No
Balam	Non Glutinous	G	11	Colored	No
Bashful	Non Glutinous	G	10	Colorless	No
Lahi	Non Glutinous	G	17	Colorless	No
Borjahinga	Non Glutinous	G	11	Colorless	No
Moircha	Non Glutinous	G	11	Colorless	Yes
Aubalam	Non Glutinous	G	11	Colorless	Yes
Papue	Non Glutinous	G	20	Colorless	Yes
Sorpuma	Non Glutinous	G	10	Colorless	Yes
Mimutim	Non Glutinous	G	18	Colorless	Yes
Local Basmati	Non Glutinous	G	11	Colorless	Yes
Arfa	Non Glutinous	G	11	Colorless	Yes
Mulahail	Non Glutinous	G	10	Colorless	Yes
Guaroi	Non Glutinous	G	17	Colorless	Yes
Harinarayan	Non Glutinous	G	17	Colorless	Yes
Ranjit	Non Glutinous	G	11	Colorless	Yes
IR8	Non Glutinous	G	11	Colorless	Yes
Bahadur	Non Glutinous	G	11	Colorless	Yes
Pankaj	Non Glutinous	G	12	Colorless	Yes
Joya	Non Glutinous	G	11	Colorless	Yes
O. rufipogon	Non Glutinous	G	7	Colored	No

ISSN: 2730-6844