Gene | Ecotype | Indel | SNP | S | πtot | θtot | dN/dS |
D
| D* | F* |
---|
Wx
| Glutinous | 6 | 1 | 23 | 0.0053 | 0.0043 | - | 1.7295 | 1.7295 | 1.8583 |
 | Nonglutinous | 17 | 7 | 31 | 0.0043 | 0.0033 |  | 1.1825 | 0.9145 | 1.369 |
OsC1
| Colored | 2 | 1 | 6 | 0.0023 | 0.0020 | - | 0.8109 | 1.0088 | 1.1449 |
 | Colorless | 3 | 8 | 10 | 0.0010 | 0.0021 | 1.00 | −1.7683 | −1.2847 | −1.7178 |
- S, number of segregating sites; π, average number of nucleotide differences per site between two sequences [33] calculated on the total number of polymorphic sites (πtot); silent sites (πsil); synonymous sites (πsyn); nonsynonymous sites (πnonsyn); θ, Watterson’s estimator of nucleotide polymorphism per base pair [32] calculated on the total number of polymorphic sites (θtot); silent sites (θsil); synonymous sites (θsyn); nonsynonymous sites (θnonsyn); D, Tajima’s D[34]; D*, Fu and Li’s D*; F*, Fu and Li’s F* [35].
- Tajima’s D, *Fu and Li’s D* and F* not significant (P > 0.10).