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Table 1 The theoretical conditional probabilities of marker genotype (columns) given QTL genotype (rows).

From: Holm multiple correction for large-scale gene-shape association mapping

 

MM

Mm

mm

AA

p 11 2 q 2

2 p 11 p 01 q 2

p 01 2 q 2

Aa

2 p 11 p 10 q ( 1 - q )

2 ( p 11 p 00 + p 10 p 01 ) ( 1 - q ) 2

2 p 00 2 ( 1 - q ) 2

aa

p 10 2 ( 1 - q ) 2

2 p 10 p 00 ( 1 - q ) 2

p 00 2 ( 1 - q ) 2