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Table 2 Summary of MeDIP-Seq experimental results

From: Analysis of the leaf methylomes of parents and their hybrids provides new insight into hybrid vigor in Populus deltoides

line No. length of sequence reads (bp) Total reads No. mapped
reads a
Percent mapped
read (%)
No. mapped
base
No. unique
mapped reads b
No. unique
mapped base
Percent unique mapped read (%)
P1 49 97,959,184 81,729,006 83.4 4,004,721,294 65,078,019 3,188,822,931 66.4
P2 49 97,959,184 72,679,485 74.2 3,561,294,765 55,648,568 2,726,779,832 56.8
H1 49 97,959,184 80,814,131 82.4 3,959,892,419 64,231,654 3,147,351,046 65.6
H2 49 97,959,184 63,730,201 65.1 3,122,779,849 54,140,276 2,652,873,524 55.3
H3 49 97,959,184 64,510,366 65.9 3,161,007,934 50,943,321 2,496,222,729 52.0
L1 49 82,792,658 52,534,101 63.5 2,574,170,949 438,630,69 2,149,290,381 53.0
L2 49 97,959,184 70,275,601 71.7 3,443,504,449 54,474,434 2,669,247,266 55.6
Total   670,547,762 486,272,891      
  1. The sequencing reads were mapped to the Populus trichocarpa v2.2 reference genome (http://www.phytozome.net/poplar.php), allowing for up to two mismatches per read. (a) the mapped reads indicate the reads mapped to the reference genome. (b) the uniquely mapped reads indicate the reads number mapped to the unique loci in the reference genome.