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Table 2 Summary of MeDIP-Seq experimental results

From: Analysis of the leaf methylomes of parents and their hybrids provides new insight into hybrid vigor in Populus deltoides

line No.

length of sequence reads (bp)

Total reads

No. mapped

reads a

Percent mapped

read (%)

No. mapped

base

No. unique

mapped reads b

No. unique

mapped base

Percent unique mapped read (%)

P1

49

97,959,184

81,729,006

83.4

4,004,721,294

65,078,019

3,188,822,931

66.4

P2

49

97,959,184

72,679,485

74.2

3,561,294,765

55,648,568

2,726,779,832

56.8

H1

49

97,959,184

80,814,131

82.4

3,959,892,419

64,231,654

3,147,351,046

65.6

H2

49

97,959,184

63,730,201

65.1

3,122,779,849

54,140,276

2,652,873,524

55.3

H3

49

97,959,184

64,510,366

65.9

3,161,007,934

50,943,321

2,496,222,729

52.0

L1

49

82,792,658

52,534,101

63.5

2,574,170,949

438,630,69

2,149,290,381

53.0

L2

49

97,959,184

70,275,601

71.7

3,443,504,449

54,474,434

2,669,247,266

55.6

Total

 

670,547,762

486,272,891

     
  1. The sequencing reads were mapped to the Populus trichocarpa v2.2 reference genome (http://www.phytozome.net/poplar.php), allowing for up to two mismatches per read. (a) the mapped reads indicate the reads mapped to the reference genome. (b) the uniquely mapped reads indicate the reads number mapped to the unique loci in the reference genome.