Table 1 Simulation conditions for a binary phenotype, two marker loci M1 and M2, a single locus (Q), sample sizes n = 100, 500, recombination fraction 
and 
, respectively, and effect size. * = = 0.0 not simulated
and 
, respectively, and effect size. *From: Intersection tests for single marker QTL analysis can be more powerful than two marker QTL analysis
Population | n |
|
| Effect Size | Number of combinations |
|---|---|---|---|---|---|
Backcross | 100, 500 | 0.0*, 0.10, 0.20, 0.30, 0.40, 0.50 | 0.0*, 0.10, 0.20, 0.30, 0.40, 0.50 | 0.40, 0.60, 0.80, 1.00 | 239* |
F 2 | 500 | 0.0*, 0.10, 0.20, 0.30, 0.40, 0.50 | 0.0*, 0.10, 0.20, 0.30, 0.40, 0.50 | 1.00 | 25 |