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Table 3 Characteristics of TOMMI-microsatellites

From: Targeted oligonucleotide-mediated microsatellite identification (TOMMI) from large-insert library clones

PAC

Locus

Chr1)

Primer pair sequence (5'-3')

Ta

Size range

Alleles

NE

PIC

HT

Repeat motif

GenBank

TAIGP714M09100Q

S0701

3p16-p14

GCAGAGTGATTCAGTTATAC

60

366–372

3

1.89

0.38

0.47

i(GT)14i(AT)6

AY253989

   

TCATCTTCCCTACCACC

        

TAIGP714M09100Q

S0702

3p16-p14

TTTGGGGGGTTTGTTTTTG

57

346–348

2

1.18

0.14

0.16

(GT)9

AY253990

   

AATATAATTGGTGGCTCGG

        

TAIGP714N07113Q

S0703

2p13-p11

AACCCACTGAACAAGGC

58

239–259

7

3.37

0.70

0.70

i(GT)11(AT)9

AY253991

   

GCAAGACAGATACTACAGG

        

TAIGP714N07113Q

S0704

2p13-p11

AGCTATCATCAGGAAATGC

58

265–285

11

5.34

0.81

0.81

(GT)18

AY253992

   

GTTCTGTCGATTTTCTACTG

        

TAIGP714I04060Q

S0705

2q21-q22

CAGGGGGTTAAAGATCAG

59

292–326

9

1.99

0.47

0.50

(GT)13

AY253993

   

GGGGCACATAAAAGGAAG

        

TAIGP714P05202Q

S0706

18q23-q24

CTGGGTTGCTAAAGAGAC

56

211–215

3

1.05

0.05

0.05

(GT)6

AY253994

   

CACCTGAAGGATGTGAG

        

TAIGP714O11196Q

S0707

13q21

GGTAGGGCTTACTTAACTC

56

163–196

11

6.89

0.85

0.86

i(GT)19i(GC)7(GA)10

AY253995

   

GAGAGGGATGAGAATCAG

        

TAIGP714I22103Q

S0708

3q11-q12

GTTAGTTTCAGGCGTATAG

56

349–397

16

6.57

0.84

0.85

(GT)15i(AT)25(GT)14(AT)11

AY253996

   

CTGTGGTATAGGTCGAAG

        

TAIGP714F10061Q

S0709

16q11-13

TTTAAGACACAGACAGCAG

58

151

1

1

0

0

i(GT)9

AY253997

   

CAGCATCTACATCCAGAC

        

TAIGP714F10061Q

S0710

16q11-13

CTCAGCACCTTACAAACC

58

326–387

14

3.88

0.72

0.74

i(TAAA)7(GT)9

AY253998

   

TCCCAAACCAATCCACAC

        

TAIGP714F10061Q

S0711

16q11-13

CAGAATCTAGCCTCAGCGTC

58

201–209

8

3.06

0.66

0.67

(GT)6(G)10

AY253999

   

CACTCCATCCCTCCCAAG

        

TAIGP714L02061Q

S0712

16q11-13

TGGCATTGCTATGGCTG

57

251–310

14

5.57

0.82

0.82

(GT)12

AY254000

   

CACAACCACCTACATATCATC

        

TAIGP714L02061Q

S0713

16q11-13

CATAATGCCCTCCACATC

54

263–317

22

11.54

0.91

0.91

(GT)17

AY254001

   

CCATATCATCCAGCAATTC

        

TAIGP714I23038Q

S0714

16q11-13

TCTAGCTGTCGTGTAGG

55

199–207

8

3.75

0.70

0.73

(GT)7

AY254002

   

GAGGGATTACTCTGAGTTAAG

        

TAIGP714I23038Q

S0715

16q11-13

GCCCTCCAGGACAAAAC

58

208–242

14

7.16

0.86

0.86

(GT)10i(GC)7i(GT)14

AY254003

   

GCTGTGACGTAGGTTGG

        

TAIGP714N18001Q

S0766

6q27-28

GTGTAGATATGTGTCTGTACA

58

439–471

14

6.98

0.86

0.86

(GAAA)4(CA)6i(CA)16

AY731063

   

AGACCTCCTATTAGAGGTGGA

        

TAIGP714H02175Q

S0767

Xq12-q13

TGACCATGTCTTGTGGTAA

53

239–247

3

2.04

0.40

0.51

(CA)11

AY731064

   

CTAGAATGGAAAACAATCTGA

        
  1. Ta = Annealing temperature; NE = Effective allele number; PIC = Polymorphism Information Content; HT = Heterozygosity; i = Interrupted sequence.
  2. 1) Physical assignment: S0701 to S0708, and S0767 [24-30]; S0709 to S0715, and S0766 (physical localisation unpublished, but results are available through the website of the INRA-UMN porcine rodent hybrid IMpRH panel [17]