Genetic variation analysis of the Bali street dog using microsatellites

Irion, Dawn N; Schaffer, Alison L; Grant, Sherry; Wilton, Alan N; Pedersen, Niels C

doi:10.1186/1471-2156-6-6

BMC Genomic Data

Table 1 Observed number of alleles, average total heterozygosity (H_T), average subpopulation heterozygosity (H_S), number of populations out of HWE, average p values, R_ST, F_ST, R_ST/F_STratio, G_STand pairwise F_STvalues for 31 loci.

From: Genetic variation analysis of the Bali street dog using microsatellites

										BSD Pairwise F_ST by Locus
	Chr.	Num. Observed Alleles	H_T	H_S	Num. Loci with p value <0.05	Average p value	R_ST	F_ST	R_ST/F_ST	× Dingo	× Chow
CPH16	CFA20	11	0.829	0.610	7	0.407	0.098	0.233	0.420	0.005	0.132
C08.618	CFA08	9	0.744	0.553	4	0.481	0.148	0.229	0.646	0.071	0.185
FH2001	CFA23	13	0.791	0.593	4	0.433	0.167	0.225	0.741	0.083	0.100
C20.446	CFA20	10	0.729	0.553	3	0.541	0.173	0.215	0.804	0.123	0.105
C01.424	CFA01	9	0.716	0.476	7	0.475	0.258	0.320	0.807	0.125	0.110
CPH02	CFA32	9	0.693	0.520	4	0.499	0.194	0.223	0.871	0.148	0.066
FH2004	CFA11	18	0.809	0.611	3	0.522	0.187	0.214	0.873	0.057	0.060
AHT137	CFA11	14	0.861	0.672	2	0.427	0.176	0.197	0.893	0.064	0.188
C03.877	CFA03	12	0.730	0.509	1	0.524	0.268	0.275	0.977	0.244	0.114
C06.636	CFA06	12	0.652	0.483	6	0.435	0.233	0.237	0.982	0.069	0.024
AHT121	CFA13	18	0.865	0.632	1	0.511	0.255	0.251	1.016	0.098	0.063
VIASD10	CFA07	9	0.759	0.555	2	0.525	0.249	0.233	1.066	0.268	0.030
C31.646	CFA31	14	0.814	0.566	7	0.410	0.301	0.281	1.075	0.088	0.036
RVC1	CFA15	9	0.774	0.569	4	0.458	0.270	0.242	1.119	0.355	0.216
LEI002	CFA27	11	0.737	0.551	4	0.534	0.259	0.229	1.127	0.107	0.149
LEI004	CFA37	13	0.667	0.509	4	0.510	0.246	0.219	1.128	0.133	0.051
C28.176	CFA28	10	0.735	0.546	6	0.400	0.270	0.234	1.152	0.249	0.013
C22.279	CFA22	11	0.836	0.529	2	0.441	0.262	0.214	1.226	0.201	0.109
PEZ02	Unlinked	12	0.762	0.600	1	0.567	0.232	0.187	1.242	0.134	0.027
FH2054	CFA12	10	0.848	0.654	4	0.524	0.251	0.199	1.261	0.055	0.069
C23.123	CFA23	8	0.766	0.636	4	0.402	0.351	0.278	1.263	0.110	0.002
CPH08	CFA19	11	0.765	0.582	4	0.465	0.284	0.222	1.276	0.082	0.056
C14.866	CFA14	10	0.840	0.604	3	0.473	0.330	0.255	1.293	0.180	0.112
PEZ08	CFA17	17	0.859	0.684	5	0.465	0.235	0.179	1.312	0.121	0.079
AHT130	CFA18	11	0.829	0.614	0	0.539	0.313	0.235	1.331	0.116	0.105
AHT111	CFA02	11	0.785	0.582	4	0.371	0.348	0.246	1.414	0.214	0.006
C10.404	CFA10	13	0.865	0.558	3	0.526	0.486	0.328	1.479	0.177	0.160
C09.250	CFA09	10	0.830	0.582	1	0.491	0.412	0.272	1.513	0.016	0.042
FH2140	CFA05	20	0.795	0.621	2	0.560	0.297	0.192	1.546	0.119	0.072
AHT139	CFA15	6	0.664	0.508	4	0.452	0.330	0.206	1.604	0.085	0.078
CPH03	CFA06	15	0.815	0.612	2	0.526	0.394	0.229	1.724	0.017	0.180
All		366	0.779	0.577	108	0.481	0.230	0.236	1.135	0.126	0.088

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