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Table 1 Haplotype results for varying degrees of missing data

From: The effect of missing data on linkage disequilibrium mapping and haplotype association analysis in the GAW14 simulated datasets

 

OR (95% CI)

SE (logOR) (95% CI)

p-Value (95% CI)

H12121

   

   Complete data

0.52 (0.49, 0.57)

-0.64 (-0.71, -0.57)

0.011 (0.005, 0.022)

   1% Missing data

0.57 (0.53, 0.61)

-0.56 (-0.64, -0.49)

0.027 (0.012, 0.052)

   5% Missing data

0.58 (0.53, 0.63)

-0.54 (-0.63, -0.46)

0.034 (0.013, 0.070)

   10% Missing data

0.52 (0.46, 0.58)

-0.66 (-0.77, -0.54)

0.010 (0.002, 0.029)

H12221

   

   Complete data

0.62 (0.58, 0.65)

-0.48 (-0.54, -0.43)

0.021 (0.010, 0.037)

   1% Missing data

0.61 (0.57, 0.64)

-0.50 (-0.57, -0.44)

0.018 (0.007, 0.034)

   5% Missing data

0.59 (0.54, 0.64)

-0.52 (-0.61, -0.44)

0.014 (0.004, 0.034)

   10% Missing data

0.59 (0.53, 0.65)

-0.53 (-0.63, -0.43)

0.014 (0.003, 0.039)

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BMC Genomic Data

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