Table 2 Proportion of outlier loci within different minor allele frequency (MAF) intervals
From: Evaluating outlier loci and their effect on the identification of pedigree errors
MAF interval (%) | Proportion of all SNPs | Loci under balancing selection (1% level) | Loci under directional selection (0.01% level) | |||
|---|---|---|---|---|---|---|
Illumina | Affymetrix | Illumina | Affymetrix | Illumina | Affymetrix | |
0 – 9.99 | 0.1% | 12.5% | 0% | 0% | 0% | 6.4% |
10 – 19.99 | 3.4% | 19.5% | 0% | 0% | 0% | 0.1% |
20 – 29.99 | 12.4% | 22.5% | 0.3% | 0.1% | 0% | 0.1% |
30 – 39.99 | 26.7% | 23.3% | 0.6% | 0% | 0% | 0% |
40 – 49.99 | 57.4% | 22.3% | 9.3% | 6.7% | 0% | 0% |