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Table 2 Summary statistics: CIDR independent replicate data

From: Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14

  Illumina III Affymetrix 10k
Total samples 192 192
No. SNPs 4,782 11,560
Total genotypes 875,106 2,127,040
Missing data rate 0.13% 6.05%
Between lab consistency rate 99.95% 99.91%*
  1. *Error rate after correction of one laboratory sample swap