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Table 2 Summary statistics: CIDR independent replicate data

From: Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14

 

Illumina III

Affymetrix 10k

Total samples

192

192

No. SNPs

4,782

11,560

Total genotypes

875,106

2,127,040

Missing data rate

0.13%

6.05%

Between lab consistency rate

99.95%

99.91%*

  1. *Error rate after correction of one laboratory sample swap