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Table 3 Power in COGA data

From: Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Trait Marker set Dz. freq. LOD Minimum P-valuea
Dominant     
   Drs0041510 MS 0.14 3.1 0.00008
  SNP 3 cM   3.8 0.00001
  SNP 2 cM   2.8 0.0002
  SNP 1 cM   4.1 0.00001
  SNP 0.6 cM   3.0 0.00008
  SNP 0.3 cM   3.9 0.00001
  SNP 0.25   4.1 0.00001
   Dtsc0061481 MS 0.31 1.0 0.02b
  SNP 3 cM   5.7 <0.00001
  SNP 2 cM   5.0 <0.00001
  SNP 1 cM   5.9 <0.00001
  SNP 0.6 cM   6.1 <0.00001
  SNP 0.3 cM   6.3 <0.00001
  SNP 0.25   6.1 <0.00001
Recessive     
   Rtsc0061481 MS 0.03 0.81 0.03b
  SNP 3 cM   1.65 0.003
  SNP 2 cM   1.70 0.003
  SNP 1 cM   1.68 0.002
  SNP 0.6 cM   1.68 0.003
  SNP 0.3 cM   1.68 0.002
  SNP 0.25   1.79 0.002
   Rtsc2832191 MS 0.22 6.0 <0.00001
  SNP 3 cM   4.5 <0.00001
  SNP 2 cM   6.2 <0.00001
  SNP 1 cM   6.7 <0.00001
  SNP 0.6 cM   7.4 <0.00001
  SNP 0.3 cM   7.5 <0.00001
  SNP 0.25   3.6 <0.00003
  1. aMinimum p-value within 20 cM of the "true" trait locus
  2. bMarker D13S325 located about 12.3 cM from the trait loci gave a p-value of 0.0004 for trait Dtsc0061481 and a p-value of 0.004 for trait Rtsc0061481