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Table 4 Type I error count in simulated data for full dataset

From: Investigation of altering single-nucleotide polymorphism density on the power to detect trait loci and frequency of false positive in nonparametric linkage analyses of qualitative traits

Trait Marker set Pop. dz. freq. # of replicates with dataa Mean number of false positives below p-value criterion ofb
     0.05 0.01 0.0017 0.001 0.0001 0.000049
Dominant          
   D8044 MS 7.5 cM 0.06 300 8.10 1.92 0.18 0.08 0 0
  SNP 3 cM    7.73 1.79 0.16 0.09 0 0
   D8050 MS 7.5 cM 0.18 300 7.63 1.82 0.53 0.38 0.03 0.02
  SNP 3 cM    7.33 2.11 0.47 0.30 0.03 0.02
   D8051 MS 7.5 cM 0.50 300 7.48 2.56 0.45 0.30 0.04 0.02
  SNP 3 cM    7.22 2.19 0.45 0.30 0.04 0.02
Recessive          
   R8045 MS 7.5 cM 0.08 300 8.59 2.36 0.29 0.16 0.01 0
  SNP 3 cM    8.11 2.23 0.25 0.14 0.01 0
   R8050 MS 7.5 cM 0.01 229 2.66 0.06 0 0 0 0
  SNP 3 cM    2.20 0.03 0 0 0 0
   R8051 MS 7.5 cM 0.22 300 7.57 2.02 0.39 0.27 0.03 0.02
  SNP 3 cM    7.44 2.03 0.47 0.34 0.04 0.01
  1. aFor rare disease not all replicates contained informative pedigrees.
  2. bMean number of false positive regions in the 9 unlinked chromosomes per replicate with p- value below the following criteria.