Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites

Table 1 Regions that show some evidence of increased allele sharing. Results shown are when NPL scores are greater or equal to 2.0 on either SNP scan or microsatellite scan or both with and without erroneous genotypes.

		Microsatellites (excluding erroneous genotypes) (n = 315)		SNPs from Affymetrix (excluding erroneous genotypes) (n = 10,081)		SNPs 1 cM subset (excluding erroneous genotypes) (n = 3,360)		Microsatellites (with erroneous genotypes (n = 315)		SNP (with erroneous genotypes (n = 10,081)		SNPs 1 cM subset (with erroneous genotypes) (n = 3,360)
Chr.	Position (cM)	NPL score	P	NPL score	P	NPL score	P	NPL score	P	NPL score	P	NPL score	P
1q	77	0.24	0.4	1.80	0.04	1.64	0.05	0.29	0.4	2.06	0.02	2.10	0.02
	146	0.85	0.2	1.97^a	0.03	1.88^a	0.03	0.82	0.2	2.06	0.02	1.63	0.05
2q	5	2.13^a	0.02	1.14	0.13	0.52	0.3	2.19	0.014	1.29	0.10	0.27	0.4
	18	2.08	0.02	2.16	0.02	2.35^h	0.009	2.08	0.02	2.19	0.014	2.29^h	0.01
	118	0.49	0.30	2.24	0.013	1.88	0.03	0.54	0.30	2.00	0.02	2.13ⁱ	0.02
	135	0.59	0.30	2.15	0.02	1.83	0.03	0.29	0.40	2.03	0.02	1.67	0.05
	244	0.90	0.20	2.80^a	0.003	2.46^a	0.007	0.92	0.20	3.04	0.0012	2.46	0.007
7q	14	1.21^b	0.11	2.30	0.011	1.77	0.04	1.64^b	0.05	2.30	0.011	1.66	0.05
	32	1.56	0.06	2.69	0.004	2.36	0.009	1.83	0.03	2.73	0.003	2.32	0.01
	60	2.37^c	0.009	2.10	0.02	1.32	0.09	2.83^c	0.002	2.02	0.02	1.30	0.1
	94	1.90	0.03	2.20	0.014	2.01	0.02	2.28	0.011	2.20	0.014	1.92	0.03
	101	1.97	0.02	2.81^a	0.002	2.51^a	0.006	2.10	0.02	2.88	0.002	2.47	0.007
	106	2.56^a	0.005	2.32	0.01	1.94	0.03	2.45	0.007	2.32	0.01	2.07	0.02
11q	107	1.32	0.09	2.24^a,f	0.012	2.14^a	0.02	1.32	0.09	2.23	0.013	2.15	0.02
	120	2.61^a	0.004	NA^g	NA	NA	NA	2.60	0.005	NA	NA	NA	NA
12q	122	1.02^d	0.2	2.02^a	0.02	1.87^a	0.03	1.02^d	0.2	1.95	0.03	1.81	0.04
13q	86	1.15^e	0.13	2.63^a	0.004	2.61^a	0.005	1.31^e	0.10	2.56	0.005	2.55	0.005

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