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Table 3 5th percentile of whole genome p-value distribution, by type of pseudo-trait (Affymetrix data)

From: Critical values and variation in type I error along chromosomes in the COGA dataset using the applied pseudo-trait method

  All pseudo-traits Allele-count pseudo-traits Normal + allele-count pseudo-traits Uniform Normal
# pseudo-traits 80 39 39 1 1
Haseman-Elston
   mean 0.010 0.011 0.007 0 0
   SD 0.039 0.036 0.043 0.040 0.046
ROMP-one
   mean 0.009 0.008 0.010 0 0
   SD 0.048 0.049 0.047 0.059 0.039
ROMP/ROOP-one
   mean 0.043 0.044 0.041 0.059 0.039
   SD 0.011 0.011 0.012 0 0
ROMP-all
   mean 0.015 0.009 0.012 0 0
   SD 0.038 0.049 0.028 0.042 0.029
ROMP/ROOP-all
   mean 0.013 0.012 0.013 0 0
   SD 0.026 0.029 0.023 0.042 0.029