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Table 2 Family-based SNP haplotype LD analysis

From: Comparison of the power between microsatellite and single-nucleotide polymorphism markers for linkage and linkage disequilibrium mapping of an electrophysiological phenotype

Haplotype Frequency z-score p-valuea 2 SNPs
h1: 2 1 0.423 2.692 0.007094 Illumina's rs
h2: 1 2 0.416 -1.869 0.061690 1476640
h3: 2 2 0.156 -1.175 0.240070 rs768055
h4: 1 1 0.005 -0.761 0.446698 Distance = 741 bp
Global-test DF = 3 χ2 = 7.564 0.055929 D' = 0.98
Haplotype Frequency z-score p-value 2 SNPs
h1: 2 1 0.438 -2.325 0.020064 Illumina's
h2: 1 2 0.371 3.060 0.002212 rs768055
h3: 2 2 0.135 -0.609 0.542501 rs1859646
h4: 1 1 0.056 -0.715 0.474386 Distance = 82,553 bp
Global-test DF = 3 χ2 = 9.494 0.023396 D' = 0.88
Haplotype Frequency z-score p-value 3 SNPs
h1: 1 2 1 0.379 -2.060 0.039409 Illumina's rs1476640
h2: 2 1 2 0.367 3.064 0.002186 rs768055
h3: 2 2 2 0.095 -0.981 0.326434 rs1859646
h4: 2 2 1 0.060 -0.633 0.526774 Distance = 741 & 82,553 bp
h5: 2 1 1 0.054 -0.524 0.600176  
h6: 1 2 2 0.039 0.217 0.828502  
Others 0.005 /   
Global-test DF = 6 χ2 = 10.352 0.110580  
Haplotype Frequency z-score p-value 2 SNPs
h1: 1 2 0.687 1.402 0.160879 Affymetrix's
h2: 2 1 0.235 -0.318 0.750300 tsc0058416
h3: 2 2 0.048 0.447 0.654974 tsc0058418
h4: 1 1 0.030 -3.456 0.000549 Distance = 148 bp
Global-test DF = 3 χ2 = 12.272 0.006509 D' = 0.98
Haplotype Frequency z-score p-value 2 SNPs
h1: 1 2 0.851 3.097 0.001958 Affymetrix's
h2: 2 1 0.115 -1.537 0.124173 tsc0590615
h3: 1 1 0.033 -3.616 0.000300 tsc0590614
h4: 2 2 0.001 /   Distance = 14 bp
Global-test DF = 2 χ2 = 15.661 0.000397 D' = 1.00
  1. aBold text indicates significant p-value.